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| Mutant Information |
|---|
| Mutant Name | FN-264 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-264 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8353389 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 8353399 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 30483929 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 34781616 | G-A | Homo | INTRON | |
| SBS | Chr1 | 38493815 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 13305995 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 24645433 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 34102576 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 34102577 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 7117514 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 11966178 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 37293718 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 2912039 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 2912040 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9557419 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11331730 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 28840624 | T-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 28840631 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g271300 |
| SBS | Chr6 | 18806565 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23758585 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26538969 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11892094 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 4895295 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 18165077 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 2988919 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16751953 | G-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 4484345 | 4484352 | 7 | |
| Deletion | Chr12 | 6088744 | 6088750 | 6 | |
| Deletion | Chr4 | 7103300 | 7103301 | 1 | |
| Deletion | Chr11 | 8854570 | 8854661 | 91 | |
| Deletion | Chr8 | 9675787 | 9676042 | 255 | |
| Deletion | Chr6 | 16208274 | 16208339 | 65 | OsKitaake06g155500 |
| Deletion | Chr3 | 20488149 | 20488150 | 1 | |
| Deletion | Chr12 | 25171130 | 25171140 | 10 | |
| Deletion | Chr5 | 27580001 | 27607000 | 26999 | 4 |
| Deletion | Chr1 | 29888415 | 29888422 | 7 | |
| Deletion | Chr1 | 36915720 | 36915726 | 6 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 38409851 | 38409855 | 3 | |
| Insertion | Chr9 | 12635637 | 12635640 | 2 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 7906197 | 8623156 | |
| Inversion | Chr10 | 7906237 | 8623161 | |
| Inversion | Chr1 | 13315960 | 13810609 | |
| Inversion | Chr1 | 13315966 | 13810620 | |
| Inversion | Chr10 | 19057387 | 19132552 | OsKitaake10g136700 |
| Inversion | Chr10 | 19057391 | 19132726 | OsKitaake10g136700 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 22445332 | Chr2 | 30584652 | OsKitaake02g312400 |
| Translocation | Chr8 | 22445751 | Chr2 | 30584658 | OsKitaake02g312400 |