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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-265 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-265 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17607694 C-A Hetero INTERGENIC
SBS Chr1 26452150 G-A Hetero INTERGENIC
SBS Chr1 27303434 T-G Hetero INTERGENIC
SBS Chr2 3729656 G-T Hetero SYNONYMOUS_CODING
SBS Chr2 12974836 C-G Hetero INTERGENIC
SBS Chr2 16453113 T-C Homo INTERGENIC
SBS Chr3 19849229 C-T Hetero INTERGENIC
SBS Chr3 21640164 C-T Homo INTERGENIC
SBS Chr3 34515184 G-A Homo INTERGENIC
SBS Chr4 6394271 A-C Hetero INTRON
SBS Chr4 13173350 G-A Homo INTERGENIC
SBS Chr4 20266866 G-A Hetero INTERGENIC
SBS Chr4 20903344 G-A Homo INTERGENIC
SBS Chr6 596878 G-A Hetero INTERGENIC
SBS Chr6 10134620 T-A Hetero INTRON
SBS Chr7 6284976 A-C Hetero INTERGENIC
SBS Chr7 15955561 C-G Homo INTERGENIC
SBS Chr8 18370709 G-C Hetero INTERGENIC
SBS Chr8 28167357 C-T Hetero INTERGENIC
SBS Chr9 8605009 T-A Homo INTERGENIC
SBS Chr9 8649083 T-C Homo INTERGENIC
SBS Chr10 10964292 G-C Hetero INTERGENIC
SBS Chr11 1893098 G-A Homo INTERGENIC
SBS Chr11 16453834 G-C Homo INTRON
SBS Chr11 18467366 T-A Homo INTERGENIC
SBS Chr11 24626455 G-A Homo INTRON
SBS Chr11 28327715 T-C Homo INTERGENIC
SBS Chr12 272002 C-A Hetero INTERGENIC
SBS Chr12 3379059 C-T Homo INTERGENIC
SBS Chr12 7251415 A-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 89043 89396 353
Deletion Chr10 2225051 2225053 2
Deletion Chr3 2696001 2721000 24999 2
Deletion Chr3 2728001 2823000 94999 14
Deletion Chr1 4095455 4095457 2
Deletion Chr1 7575761 7575822 61
Deletion Chr5 10058688 10058689 1
Deletion Chr1 11569861 11570023 162
Deletion Chr1 14389698 14389700 2
Deletion Chr5 19747098 19747099 1
Deletion Chr9 20770590 20770597 7
Deletion Chr1 31113439 31113446 7
Deletion Chr1 44091770 44092031 261 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 23147106 23147109 2
Insertion Chr8 26682322 26682325 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17607694	C-A	Hetero	INTERGENIC
SBS	Chr1	26452150	G-A	Hetero	INTERGENIC
SBS	Chr1	27303434	T-G	Hetero	INTERGENIC
SBS	Chr2	3729656	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	12974836	C-G	Hetero	INTERGENIC
SBS	Chr2	16453113	T-C	Homo	INTERGENIC
SBS	Chr3	19849229	C-T	Hetero	INTERGENIC
SBS	Chr3	21640164	C-T	Homo	INTERGENIC
SBS	Chr3	34515184	G-A	Homo	INTERGENIC
SBS	Chr4	6394271	A-C	Hetero	INTRON
SBS	Chr4	13173350	G-A	Homo	INTERGENIC
SBS	Chr4	20266866	G-A	Hetero	INTERGENIC
SBS	Chr4	20903344	G-A	Homo	INTERGENIC
SBS	Chr6	596878	G-A	Hetero	INTERGENIC
SBS	Chr6	10134620	T-A	Hetero	INTRON
SBS	Chr7	6284976	A-C	Hetero	INTERGENIC
SBS	Chr7	15955561	C-G	Homo	INTERGENIC
SBS	Chr8	18370709	G-C	Hetero	INTERGENIC
SBS	Chr8	28167357	C-T	Hetero	INTERGENIC
SBS	Chr9	8605009	T-A	Homo	INTERGENIC
SBS	Chr9	8649083	T-C	Homo	INTERGENIC
SBS	Chr10	10964292	G-C	Hetero	INTERGENIC
SBS	Chr11	1893098	G-A	Homo	INTERGENIC
SBS	Chr11	16453834	G-C	Homo	INTRON
SBS	Chr11	18467366	T-A	Homo	INTERGENIC
SBS	Chr11	24626455	G-A	Homo	INTRON
SBS	Chr11	28327715	T-C	Homo	INTERGENIC
SBS	Chr12	272002	C-A	Hetero	INTERGENIC
SBS	Chr12	3379059	C-T	Homo	INTERGENIC
SBS	Chr12	7251415	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	89043	89396	353
Deletion	Chr10	2225051	2225053	2
Deletion	Chr3	2696001	2721000	24999	2
Deletion	Chr3	2728001	2823000	94999	14
Deletion	Chr1	4095455	4095457	2
Deletion	Chr1	7575761	7575822	61
Deletion	Chr5	10058688	10058689	1
Deletion	Chr1	11569861	11570023	162
Deletion	Chr1	14389698	14389700	2
Deletion	Chr5	19747098	19747099	1
Deletion	Chr9	20770590	20770597	7
Deletion	Chr1	31113439	31113446	7
Deletion	Chr1	44091770	44092031	261	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes