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| Mutant Information |
|---|
| Mutant Name | FN-268 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-268 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4957343 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 4957344 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 5491243 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 23406594 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41253916 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 17839850 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19911317 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 23553294 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g230700 |
| SBS | Chr2 | 23553881 | C-A | Homo | INTRON | |
| SBS | Chr2 | 30052629 | T-C | Homo | INTRON | |
| SBS | Chr2 | 31824130 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 37464942 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 6490615 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 12576616 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 29340445 | A-C | Homo | INTERGENIC | |
| SBS | Chr5 | 20970157 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 21014788 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 27329446 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 27329447 | C-G | Homo | INTERGENIC | |
| SBS | Chr6 | 2517465 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 4878934 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g066200 |
| SBS | Chr7 | 13755523 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26718303 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15018771 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13754854 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14662047 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 28578355 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3758291 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 18845014 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 19519438 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 21002776 | A-T | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1254001 | 1281000 | 26999 | 4 |
| Deletion | Chr1 | 2934645 | 2934647 | 2 | |
| Deletion | Chr11 | 5494256 | 5494258 | 2 | |
| Deletion | Chr10 | 7871124 | 7871131 | 7 | |
| Deletion | Chr4 | 9395057 | 9395058 | 1 | |
| Deletion | Chr2 | 10958274 | 10958275 | 1 | |
| Deletion | Chr8 | 11509646 | 11509651 | 5 | |
| Deletion | Chr6 | 14356342 | 14356344 | 2 | |
| Deletion | Chr3 | 15403932 | 15403933 | 1 | |
| Deletion | Chr10 | 17374379 | 17374381 | 2 | |
| Deletion | Chr12 | 19507377 | 19507383 | 6 | |
| Deletion | Chr8 | 19633920 | 19633925 | 5 | |
| Deletion | Chr4 | 20490968 | 20490970 | 2 | |
| Deletion | Chr11 | 20594121 | 20594123 | 2 | |
| Deletion | Chr11 | 20607688 | 20607696 | 8 | |
| Deletion | Chr5 | 27498244 | 27498245 | 1 | OsKitaake05g250200 |
| Deletion | Chr4 | 36704480 | 36704490 | 10 | |
| Deletion | Chr1 | 38637795 | 38637796 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 32961813 | 32961820 | 6 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 17116176 | 17120543 | |
| Inversion | Chr2 | 17116181 | 17120536 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 6302553 | Chr5 | 4770999 | |
| Translocation | Chr11 | 13931053 | Chr10 | 8624070 | |
| Translocation | Chr12 | 24565507 | Chr1 | 2531908 | OsKitaake12g198800 |