Search Kitaake

Mutant Information

Mutant Name	FN-269 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-269 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27937476 G-C Homo UTR_5_PRIME
SBS Chr1 43963539 A-T Homo INTERGENIC
SBS Chr1 44270625 C-G Homo NON_SYNONYMOUS_CODING OsKitaake01g494700
SBS Chr2 4476372 C-T Homo INTERGENIC
SBS Chr2 29854584 C-T Hetero UTR_5_PRIME
SBS Chr3 4464579 G-A Hetero UTR_5_PRIME
SBS Chr3 5557712 T-C Hetero INTERGENIC
SBS Chr3 8669850 G-A Hetero INTERGENIC
SBS Chr3 10610287 C-T Hetero INTRON
SBS Chr3 21763908 G-A Hetero INTERGENIC
SBS Chr3 28993408 T-C Hetero INTERGENIC
SBS Chr3 36388159 A-T Hetero INTRON
SBS Chr4 204308 G-T Hetero INTERGENIC
SBS Chr4 9659636 G-C Hetero INTERGENIC
SBS Chr4 12620519 A-C Hetero INTERGENIC
SBS Chr4 28907544 G-T Hetero INTERGENIC
SBS Chr5 4627278 C-T Hetero INTERGENIC
SBS Chr5 17333409 T-A Hetero INTRON
SBS Chr5 19406489 G-T Hetero INTRON
SBS Chr6 10694783 A-G Homo INTERGENIC
SBS Chr6 16149506 T-A Homo INTERGENIC
SBS Chr6 17171546 C-T Hetero INTERGENIC
SBS Chr7 29394220 T-A Hetero INTRON
SBS Chr8 8236339 T-C Hetero INTRON
SBS Chr8 13467365 G-A Hetero INTERGENIC
SBS Chr8 13673385 C-A Hetero INTERGENIC
SBS Chr9 4171154 C-T Hetero INTERGENIC
SBS Chr9 15451550 G-A Hetero INTRON
SBS Chr10 12939367 C-T Hetero INTERGENIC
SBS Chr10 15227348 T-C Hetero INTERGENIC
SBS Chr11 1427224 G-T Homo INTERGENIC
SBS Chr11 12954077 T-A Homo INTERGENIC
SBS Chr11 19495139 G-A Homo INTERGENIC
SBS Chr11 29515440 G-T Homo UTR_5_PRIME
SBS Chr12 5576672 G-A Hetero INTRON
SBS Chr12 6140501 C-T Hetero INTERGENIC
SBS Chr12 7232677 T-C Hetero INTERGENIC
SBS Chr12 7493512 T-G Hetero INTERGENIC
SBS Chr12 10746294 C-T Homo INTERGENIC
SBS Chr12 25220150 G-A Hetero INTERGENIC
SBS Chr12 25220151 A-G Hetero INTERGENIC
SBS Chr12 25919118 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g214200

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 333710 333712 2 OsKitaake07g002800
Deletion Chr8 513028 513030 2
Deletion Chr6 874881 874885 4
Deletion Chr1 1786849 1786855 6
Deletion Chr5 2564502 2564504 2
Deletion Chr9 3562218 3562222 4
Deletion Chr5 9571503 9571512 9
Deletion Chr1 10116955 10116956 1
Deletion Chr11 12954128 12954129 1
Deletion Chr10 13599426 13599427 1
Deletion Chr2 13702696 13702698 2
Deletion Chr5 15063581 15063582 1 OsKitaake05g114801
Deletion Chr1 15229229 15229231 2
Deletion Chr1 17988658 17988843 185 OsKitaake01g182400
Deletion Chr8 18229240 18229246 6
Deletion Chr1 18830498 18830505 7
Deletion Chr1 22045491 22045500 9
Deletion Chr6 26736691 26736709 18

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 12990612 12990615 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 13674668 14223483
Inversion Chr8 13676036 14223485
Inversion Chr1 36552545 36654523 OsKitaake01g389600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 2520468 Chr3 35751920 OsKitaake03g393000
Translocation Chr5 2521159 Chr3 35751950 OsKitaake03g393000
Translocation Chr8 13674693 Chr7 23118620
Translocation Chr8 13675995 Chr7 23118457

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27937476	G-C	Homo	UTR_5_PRIME
SBS	Chr1	43963539	A-T	Homo	INTERGENIC
SBS	Chr1	44270625	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g494700
SBS	Chr2	4476372	C-T	Homo	INTERGENIC
SBS	Chr2	29854584	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	4464579	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	5557712	T-C	Hetero	INTERGENIC
SBS	Chr3	8669850	G-A	Hetero	INTERGENIC
SBS	Chr3	10610287	C-T	Hetero	INTRON
SBS	Chr3	21763908	G-A	Hetero	INTERGENIC
SBS	Chr3	28993408	T-C	Hetero	INTERGENIC
SBS	Chr3	36388159	A-T	Hetero	INTRON
SBS	Chr4	204308	G-T	Hetero	INTERGENIC
SBS	Chr4	9659636	G-C	Hetero	INTERGENIC
SBS	Chr4	12620519	A-C	Hetero	INTERGENIC
SBS	Chr4	28907544	G-T	Hetero	INTERGENIC
SBS	Chr5	4627278	C-T	Hetero	INTERGENIC
SBS	Chr5	17333409	T-A	Hetero	INTRON
SBS	Chr5	19406489	G-T	Hetero	INTRON
SBS	Chr6	10694783	A-G	Homo	INTERGENIC
SBS	Chr6	16149506	T-A	Homo	INTERGENIC
SBS	Chr6	17171546	C-T	Hetero	INTERGENIC
SBS	Chr7	29394220	T-A	Hetero	INTRON
SBS	Chr8	8236339	T-C	Hetero	INTRON
SBS	Chr8	13467365	G-A	Hetero	INTERGENIC
SBS	Chr8	13673385	C-A	Hetero	INTERGENIC
SBS	Chr9	4171154	C-T	Hetero	INTERGENIC
SBS	Chr9	15451550	G-A	Hetero	INTRON
SBS	Chr10	12939367	C-T	Hetero	INTERGENIC
SBS	Chr10	15227348	T-C	Hetero	INTERGENIC
SBS	Chr11	1427224	G-T	Homo	INTERGENIC
SBS	Chr11	12954077	T-A	Homo	INTERGENIC
SBS	Chr11	19495139	G-A	Homo	INTERGENIC
SBS	Chr11	29515440	G-T	Homo	UTR_5_PRIME
SBS	Chr12	5576672	G-A	Hetero	INTRON
SBS	Chr12	6140501	C-T	Hetero	INTERGENIC
SBS	Chr12	7232677	T-C	Hetero	INTERGENIC
SBS	Chr12	7493512	T-G	Hetero	INTERGENIC
SBS	Chr12	10746294	C-T	Homo	INTERGENIC
SBS	Chr12	25220150	G-A	Hetero	INTERGENIC
SBS	Chr12	25220151	A-G	Hetero	INTERGENIC
SBS	Chr12	25919118	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g214200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	333710	333712	2	OsKitaake07g002800
Deletion	Chr8	513028	513030	2
Deletion	Chr6	874881	874885	4
Deletion	Chr1	1786849	1786855	6
Deletion	Chr5	2564502	2564504	2
Deletion	Chr9	3562218	3562222	4
Deletion	Chr5	9571503	9571512	9
Deletion	Chr1	10116955	10116956	1
Deletion	Chr11	12954128	12954129	1
Deletion	Chr10	13599426	13599427	1
Deletion	Chr2	13702696	13702698	2
Deletion	Chr5	15063581	15063582	1	OsKitaake05g114801
Deletion	Chr1	15229229	15229231	2
Deletion	Chr1	17988658	17988843	185	OsKitaake01g182400
Deletion	Chr8	18229240	18229246	6
Deletion	Chr1	18830498	18830505	7
Deletion	Chr1	22045491	22045500	9
Deletion	Chr6	26736691	26736709	18

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	13674668	14223483
Inversion	Chr8	13676036	14223485
Inversion	Chr1	36552545	36654523	OsKitaake01g389600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes