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Mutant Information

Mutant Name	FN-27 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-27 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1916757 G-T Hetero INTERGENIC
SBS Chr1 43259461 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g477900
SBS Chr2 5769463 C-T Hetero INTERGENIC
SBS Chr2 26657439 G-T Hetero INTERGENIC
SBS Chr3 25017589 C-G Hetero INTERGENIC
SBS Chr3 25915378 T-G Hetero INTERGENIC
SBS Chr3 32645743 G-A Hetero INTERGENIC
SBS Chr3 32645744 A-T Hetero INTERGENIC
SBS Chr3 32963366 G-T Hetero INTRON
SBS Chr4 14099704 G-A Hetero INTERGENIC
SBS Chr4 18462295 C-T Homo INTERGENIC
SBS Chr4 19108384 T-A Hetero INTERGENIC
SBS Chr4 24592708 G-A Homo INTERGENIC
SBS Chr4 32768727 C-G Hetero INTERGENIC
SBS Chr4 34923987 C-A Hetero START_GAINED
SBS Chr4 36367171 T-A Hetero INTERGENIC
SBS Chr5 3230604 A-C Hetero INTERGENIC
SBS Chr5 12036731 G-T Hetero INTERGENIC
SBS Chr5 12557060 A-T Hetero INTERGENIC
SBS Chr5 12563882 C-G Hetero INTERGENIC
SBS Chr5 20251627 A-G Hetero INTERGENIC
SBS Chr5 22792019 G-A Hetero INTERGENIC
SBS Chr6 19832034 C-T Homo INTERGENIC
SBS Chr7 3074684 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g038600
SBS Chr7 5814313 T-G Homo INTERGENIC
SBS Chr7 23350847 A-T Hetero INTERGENIC
SBS Chr8 5328762 T-C Hetero INTERGENIC
SBS Chr8 7392145 C-T Homo INTERGENIC
SBS Chr8 8695525 C-T Hetero INTRON
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 18212230 G-A Homo INTERGENIC
SBS Chr8 22075092 G-T Hetero INTRON
SBS Chr8 22796564 T-C Hetero INTERGENIC
SBS Chr9 22190803 C-T Hetero INTERGENIC
SBS Chr10 5949006 C-T Homo INTERGENIC
SBS Chr11 2587755 G-A Hetero INTERGENIC
SBS Chr12 7745093 A-T Hetero INTERGENIC
SBS Chr12 7777366 A-T Hetero UTR_5_PRIME
SBS Chr12 12592674 C-T Homo INTERGENIC
SBS Chr12 18165328 A-G Homo INTERGENIC
SBS Chr12 25950558 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 6406813 6406814 1
Deletion Chr3 6684510 6684512 2 OsKitaake03g094900
Deletion Chr10 8674720 8675052 332
Deletion Chr2 13094657 13094730 73
Deletion Chr11 17306001 17306002 1
Deletion Chr3 20052841 20052996 155
Deletion Chr10 21195460 21195465 5 OsKitaake10g164800
Deletion Chr11 23029233 23029234 1
Deletion Chr11 25175620 25175622 2
Deletion Chr8 26173001 26238000 64999 12
Deletion Chr4 26544001 26653000 108999 20
Deletion Chr6 26980035 26980037 2
Deletion Chr3 33422259 33422263 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41577549 41577552 2
Insertion Chr11 9305702 9305705 2
Insertion Chr3 16744382 16744384 1
Insertion Chr6 16104561 16104563 1
Insertion Chr9 4745786 4745788 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16053036 16453837
Inversion Chr4 16453810 16513010
Inversion Chr8 25932856 26169948 2
Inversion Chr8 25938406 26237936 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1916757	G-T	Hetero	INTERGENIC
SBS	Chr1	43259461	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g477900
SBS	Chr2	5769463	C-T	Hetero	INTERGENIC
SBS	Chr2	26657439	G-T	Hetero	INTERGENIC
SBS	Chr3	25017589	C-G	Hetero	INTERGENIC
SBS	Chr3	25915378	T-G	Hetero	INTERGENIC
SBS	Chr3	32645743	G-A	Hetero	INTERGENIC
SBS	Chr3	32645744	A-T	Hetero	INTERGENIC
SBS	Chr3	32963366	G-T	Hetero	INTRON
SBS	Chr4	14099704	G-A	Hetero	INTERGENIC
SBS	Chr4	18462295	C-T	Homo	INTERGENIC
SBS	Chr4	19108384	T-A	Hetero	INTERGENIC
SBS	Chr4	24592708	G-A	Homo	INTERGENIC
SBS	Chr4	32768727	C-G	Hetero	INTERGENIC
SBS	Chr4	34923987	C-A	Hetero	START_GAINED
SBS	Chr4	36367171	T-A	Hetero	INTERGENIC
SBS	Chr5	3230604	A-C	Hetero	INTERGENIC
SBS	Chr5	12036731	G-T	Hetero	INTERGENIC
SBS	Chr5	12557060	A-T	Hetero	INTERGENIC
SBS	Chr5	12563882	C-G	Hetero	INTERGENIC
SBS	Chr5	20251627	A-G	Hetero	INTERGENIC
SBS	Chr5	22792019	G-A	Hetero	INTERGENIC
SBS	Chr6	19832034	C-T	Homo	INTERGENIC
SBS	Chr7	3074684	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g038600
SBS	Chr7	5814313	T-G	Homo	INTERGENIC
SBS	Chr7	23350847	A-T	Hetero	INTERGENIC
SBS	Chr8	5328762	T-C	Hetero	INTERGENIC
SBS	Chr8	7392145	C-T	Homo	INTERGENIC
SBS	Chr8	8695525	C-T	Hetero	INTRON
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	18212230	G-A	Homo	INTERGENIC
SBS	Chr8	22075092	G-T	Hetero	INTRON
SBS	Chr8	22796564	T-C	Hetero	INTERGENIC
SBS	Chr9	22190803	C-T	Hetero	INTERGENIC
SBS	Chr10	5949006	C-T	Homo	INTERGENIC
SBS	Chr11	2587755	G-A	Hetero	INTERGENIC
SBS	Chr12	7745093	A-T	Hetero	INTERGENIC
SBS	Chr12	7777366	A-T	Hetero	UTR_5_PRIME
SBS	Chr12	12592674	C-T	Homo	INTERGENIC
SBS	Chr12	18165328	A-G	Homo	INTERGENIC
SBS	Chr12	25950558	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	6406813	6406814	1
Deletion	Chr3	6684510	6684512	2	OsKitaake03g094900
Deletion	Chr10	8674720	8675052	332
Deletion	Chr2	13094657	13094730	73
Deletion	Chr11	17306001	17306002	1
Deletion	Chr3	20052841	20052996	155
Deletion	Chr10	21195460	21195465	5	OsKitaake10g164800
Deletion	Chr11	23029233	23029234	1
Deletion	Chr11	25175620	25175622	2
Deletion	Chr8	26173001	26238000	64999	12
Deletion	Chr4	26544001	26653000	108999	20
Deletion	Chr6	26980035	26980037	2
Deletion	Chr3	33422259	33422263	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16053036	16453837
Inversion	Chr4	16453810	16513010
Inversion	Chr8	25932856	26169948	2
Inversion	Chr8	25938406	26237936	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes