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Mutant Information

Mutant Name	FN-272 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-272 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13518705 T-G Homo INTERGENIC
SBS Chr1 23668217 A-G Homo UTR_3_PRIME
SBS Chr1 30195983 G-C Homo INTERGENIC
SBS Chr1 34762327 A-T Hetero INTERGENIC
SBS Chr2 323649 A-T Hetero INTERGENIC
SBS Chr3 3989426 A-G Homo INTRON
SBS Chr3 15705181 T-C Hetero INTRON
SBS Chr3 16312895 T-C Hetero INTERGENIC
SBS Chr4 1788359 C-T Hetero INTERGENIC
SBS Chr4 17561615 G-A Hetero INTERGENIC
SBS Chr4 24549603 G-T Hetero INTERGENIC
SBS Chr5 4290448 G-T Hetero INTERGENIC
SBS Chr5 12496625 G-T Hetero UTR_5_PRIME
SBS Chr5 12496626 C-T Hetero UTR_5_PRIME
SBS Chr5 19035953 T-G Hetero INTERGENIC
SBS Chr5 23968638 T-C Hetero INTERGENIC
SBS Chr6 11036058 A-T Homo INTERGENIC
SBS Chr6 22119301 C-G Hetero INTERGENIC
SBS Chr6 26902486 A-G Homo INTERGENIC
SBS Chr7 1431860 C-T Hetero INTERGENIC
SBS Chr7 5376781 C-T Hetero INTERGENIC
SBS Chr7 7273398 T-C Hetero INTERGENIC
SBS Chr7 11117734 C-A Hetero INTERGENIC
SBS Chr8 2577412 C-T Homo INTERGENIC
SBS Chr8 11603017 A-T Hetero INTERGENIC
SBS Chr9 4001072 C-T Homo INTERGENIC
SBS Chr9 7060859 T-C Homo INTERGENIC
SBS Chr9 13977153 G-C Hetero INTERGENIC
SBS Chr9 21222706 G-A Homo INTERGENIC
SBS Chr10 15929688 C-T Hetero INTERGENIC
SBS Chr11 9178985 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g096850
SBS Chr12 13661983 A-T Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3200944 3200946 2
Deletion Chr12 5795172 5795175 3
Deletion Chr2 9589001 9598000 8999
Deletion Chr3 10438011 10438013 2
Deletion Chr1 11352445 11352569 124
Deletion Chr4 14270513 14270520 7
Deletion Chr3 15765001 15801000 35999 5
Deletion Chr1 16076781 16076783 2
Deletion Chr11 19268801 19268803 2
Deletion Chr9 19866740 19866743 3
Deletion Chr11 20672482 20672493 11
Deletion Chr5 20685441 20685457 16
Deletion Chr11 22470826 22470828 2
Deletion Chr12 22713058 22713060 2
Deletion Chr1 22725741 22725742 1
Deletion Chr12 24349034 24349044 10 OsKitaake12g195800
Deletion Chr12 24912468 24912473 5
Deletion Chr5 25723230 25723238 8
Deletion Chr1 27038288 27038289 1
Deletion Chr1 30195995 30196013 18
Deletion Chr1 33037241 33037250 9
Deletion Chr2 35429789 35429790 1
Deletion Chr4 36285698 36285709 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40864591 40864594 2
Insertion Chr7 12682133 12682136 2
Insertion Chr6 11347 11349 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 2842419 3319366 2
Inversion Chr1 2847099 3319368 OsKitaake01g043300
Inversion Chr7 25748158 25886944
Inversion Chr7 25748169 25886949

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13518705	T-G	Homo	INTERGENIC
SBS	Chr1	23668217	A-G	Homo	UTR_3_PRIME
SBS	Chr1	30195983	G-C	Homo	INTERGENIC
SBS	Chr1	34762327	A-T	Hetero	INTERGENIC
SBS	Chr2	323649	A-T	Hetero	INTERGENIC
SBS	Chr3	3989426	A-G	Homo	INTRON
SBS	Chr3	15705181	T-C	Hetero	INTRON
SBS	Chr3	16312895	T-C	Hetero	INTERGENIC
SBS	Chr4	1788359	C-T	Hetero	INTERGENIC
SBS	Chr4	17561615	G-A	Hetero	INTERGENIC
SBS	Chr4	24549603	G-T	Hetero	INTERGENIC
SBS	Chr5	4290448	G-T	Hetero	INTERGENIC
SBS	Chr5	12496625	G-T	Hetero	UTR_5_PRIME
SBS	Chr5	12496626	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	19035953	T-G	Hetero	INTERGENIC
SBS	Chr5	23968638	T-C	Hetero	INTERGENIC
SBS	Chr6	11036058	A-T	Homo	INTERGENIC
SBS	Chr6	22119301	C-G	Hetero	INTERGENIC
SBS	Chr6	26902486	A-G	Homo	INTERGENIC
SBS	Chr7	1431860	C-T	Hetero	INTERGENIC
SBS	Chr7	5376781	C-T	Hetero	INTERGENIC
SBS	Chr7	7273398	T-C	Hetero	INTERGENIC
SBS	Chr7	11117734	C-A	Hetero	INTERGENIC
SBS	Chr8	2577412	C-T	Homo	INTERGENIC
SBS	Chr8	11603017	A-T	Hetero	INTERGENIC
SBS	Chr9	4001072	C-T	Homo	INTERGENIC
SBS	Chr9	7060859	T-C	Homo	INTERGENIC
SBS	Chr9	13977153	G-C	Hetero	INTERGENIC
SBS	Chr9	21222706	G-A	Homo	INTERGENIC
SBS	Chr10	15929688	C-T	Hetero	INTERGENIC
SBS	Chr11	9178985	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g096850
SBS	Chr12	13661983	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3200944	3200946	2
Deletion	Chr12	5795172	5795175	3
Deletion	Chr2	9589001	9598000	8999
Deletion	Chr3	10438011	10438013	2
Deletion	Chr1	11352445	11352569	124
Deletion	Chr4	14270513	14270520	7
Deletion	Chr3	15765001	15801000	35999	5
Deletion	Chr1	16076781	16076783	2
Deletion	Chr11	19268801	19268803	2
Deletion	Chr9	19866740	19866743	3
Deletion	Chr11	20672482	20672493	11
Deletion	Chr5	20685441	20685457	16
Deletion	Chr11	22470826	22470828	2
Deletion	Chr12	22713058	22713060	2
Deletion	Chr1	22725741	22725742	1
Deletion	Chr12	24349034	24349044	10	OsKitaake12g195800
Deletion	Chr12	24912468	24912473	5
Deletion	Chr5	25723230	25723238	8
Deletion	Chr1	27038288	27038289	1
Deletion	Chr1	30195995	30196013	18
Deletion	Chr1	33037241	33037250	9
Deletion	Chr2	35429789	35429790	1
Deletion	Chr4	36285698	36285709	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2842419	3319366	2
Inversion	Chr1	2847099	3319368	OsKitaake01g043300
Inversion	Chr7	25748158	25886944
Inversion	Chr7	25748169	25886949

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes