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| Mutant Information |
|---|
| Mutant Name | FN-273 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-273 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9291904 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 15318074 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 20141227 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 24829185 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 36480445 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 38635059 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 40283382 | C-G | Hetero | START_GAINED | |
| SBS | Chr2 | 8793851 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 11718699 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22006662 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28015128 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 12213674 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7014615 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8096581 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20744478 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 21361893 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23072538 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g199100 |
| SBS | Chr7 | 25026096 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 3380149 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 13866674 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 2810245 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 7668899 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9723900 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16545099 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr10 | 5261154 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 9794217 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 12018136 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 3343063 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23231822 | A-G | Homo | INTRON |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 708477 | 708479 | 2 | |
| Deletion | Chr5 | 2916209 | 2916210 | 1 | OsKitaake05g033900 |
| Deletion | Chr10 | 3732953 | 3732955 | 2 | |
| Deletion | Chr11 | 6167510 | 6167511 | 1 | |
| Deletion | Chr1 | 11947509 | 11947512 | 3 | |
| Deletion | Chr11 | 12664510 | 12664511 | 1 | |
| Deletion | Chr6 | 14466832 | 14466836 | 4 | |
| Deletion | Chr7 | 14588107 | 14588108 | 1 | |
| Deletion | Chr3 | 16487271 | 16487279 | 8 | |
| Deletion | Chr2 | 26957473 | 26957482 | 9 | |
| Deletion | Chr2 | 29472872 | 29472873 | 1 | |
| Deletion | Chr2 | 29472936 | 29472937 | 1 | |
| Deletion | Chr3 | 29756840 | 29756843 | 3 | |
| Deletion | Chr2 | 30335102 | 30335108 | 6 | |
| Deletion | Chr1 | 40100001 | 40162000 | 61999 | 9 |
| Deletion | Chr1 | 40171001 | 40205000 | 33999 | 4 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 3860887 | Chr3 | 25566908 | |
| Translocation | Chr7 | 3860912 | Chr3 | 25085288 | |
| Translocation | Chr7 | 27670272 | Chr3 | 5485750 | 2 |
| Translocation | Chr7 | 27670279 | Chr3 | 5346336 | OsKitaake07g258400 |