Search Kitaake

Mutant Information

Mutant Name	FN-274 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-274 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1310787 T-G Hetero INTERGENIC
SBS Chr1 19554453 T-A Hetero INTERGENIC
SBS Chr1 21845113 G-A Homo INTERGENIC
SBS Chr1 41533149 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g453500
SBS Chr1 41533150 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g453500
SBS Chr2 3416676 A-T Homo INTERGENIC
SBS Chr3 26739294 C-G Hetero INTRON
SBS Chr3 26837831 C-T Hetero INTERGENIC
SBS Chr3 27290277 C-T Hetero INTRON
SBS Chr3 31897682 G-A Hetero INTRON
SBS Chr3 32345711 A-G Homo INTERGENIC
SBS Chr4 17308767 G-C Homo INTERGENIC
SBS Chr4 23663805 G-A Hetero INTERGENIC
SBS Chr5 1915851 C-T Homo INTERGENIC
SBS Chr5 14177058 G-A Hetero INTERGENIC
SBS Chr5 16173225 G-A Hetero INTERGENIC
SBS Chr5 16173226 C-A Hetero INTERGENIC
SBS Chr5 21369301 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g173200
SBS Chr6 20080399 G-A Hetero INTERGENIC
SBS Chr6 22256355 C-T Hetero INTERGENIC
SBS Chr6 29548819 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g274700
SBS Chr6 30450173 A-C Hetero INTERGENIC
SBS Chr7 8798473 C-T Hetero INTERGENIC
SBS Chr7 16376330 C-A Hetero INTERGENIC
SBS Chr7 26311890 C-T Hetero INTERGENIC
SBS Chr7 26438459 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g244200
SBS Chr7 26548509 G-T Hetero INTERGENIC
SBS Chr7 26548514 T-G Hetero INTERGENIC
SBS Chr8 13127540 T-C Homo INTRON
SBS Chr8 18900657 G-A Hetero INTRON
SBS Chr8 20896926 C-T Homo INTERGENIC
SBS Chr8 24249981 A-T Homo INTRON
SBS Chr9 2511469 T-G Hetero INTERGENIC
SBS Chr10 4750570 T-C Homo INTRON
SBS Chr11 6656103 G-C Hetero INTERGENIC
SBS Chr11 8083090 G-A Hetero INTERGENIC
SBS Chr11 14923028 G-A Hetero INTERGENIC
SBS Chr11 16438048 C-T Hetero INTERGENIC
SBS Chr12 10196956 T-G Homo SYNONYMOUS_CODING
SBS Chr12 12270558 G-T Homo INTERGENIC
SBS Chr12 26302424 A-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2511218 2511219 1
Deletion Chr5 2948142 2948144 2 OsKitaake05g034300
Deletion Chr8 4211200 4211202 2
Deletion Chr1 13240405 13240430 25
Deletion Chr9 13892389 13892392 3
Deletion Chr10 15415821 15415829 8
Deletion Chr3 19228504 19228508 4
Deletion Chr3 20634733 20634735 2
Deletion Chr6 21390560 21390563 3
Deletion Chr5 22854188 22854193 5
Deletion Chr3 24634627 24634628 1
Deletion Chr5 27742982 27742987 5 OsKitaake05g253900
Deletion Chr1 29413341 29413347 6
Deletion Chr1 30298001 30312000 13999 3
Deletion Chr1 41900166 41900174 8

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 14159851 14159853 1
Insertion Chr8 29116873 29116881 7
Insertion Chr11 1838505 1838508 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 30219803 30310796 OsKitaake01g297500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1310787	T-G	Hetero	INTERGENIC
SBS	Chr1	19554453	T-A	Hetero	INTERGENIC
SBS	Chr1	21845113	G-A	Homo	INTERGENIC
SBS	Chr1	41533149	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g453500
SBS	Chr1	41533150	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g453500
SBS	Chr2	3416676	A-T	Homo	INTERGENIC
SBS	Chr3	26739294	C-G	Hetero	INTRON
SBS	Chr3	26837831	C-T	Hetero	INTERGENIC
SBS	Chr3	27290277	C-T	Hetero	INTRON
SBS	Chr3	31897682	G-A	Hetero	INTRON
SBS	Chr3	32345711	A-G	Homo	INTERGENIC
SBS	Chr4	17308767	G-C	Homo	INTERGENIC
SBS	Chr4	23663805	G-A	Hetero	INTERGENIC
SBS	Chr5	1915851	C-T	Homo	INTERGENIC
SBS	Chr5	14177058	G-A	Hetero	INTERGENIC
SBS	Chr5	16173225	G-A	Hetero	INTERGENIC
SBS	Chr5	16173226	C-A	Hetero	INTERGENIC
SBS	Chr5	21369301	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g173200
SBS	Chr6	20080399	G-A	Hetero	INTERGENIC
SBS	Chr6	22256355	C-T	Hetero	INTERGENIC
SBS	Chr6	29548819	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g274700
SBS	Chr6	30450173	A-C	Hetero	INTERGENIC
SBS	Chr7	8798473	C-T	Hetero	INTERGENIC
SBS	Chr7	16376330	C-A	Hetero	INTERGENIC
SBS	Chr7	26311890	C-T	Hetero	INTERGENIC
SBS	Chr7	26438459	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g244200
SBS	Chr7	26548509	G-T	Hetero	INTERGENIC
SBS	Chr7	26548514	T-G	Hetero	INTERGENIC
SBS	Chr8	13127540	T-C	Homo	INTRON
SBS	Chr8	18900657	G-A	Hetero	INTRON
SBS	Chr8	20896926	C-T	Homo	INTERGENIC
SBS	Chr8	24249981	A-T	Homo	INTRON
SBS	Chr9	2511469	T-G	Hetero	INTERGENIC
SBS	Chr10	4750570	T-C	Homo	INTRON
SBS	Chr11	6656103	G-C	Hetero	INTERGENIC
SBS	Chr11	8083090	G-A	Hetero	INTERGENIC
SBS	Chr11	14923028	G-A	Hetero	INTERGENIC
SBS	Chr11	16438048	C-T	Hetero	INTERGENIC
SBS	Chr12	10196956	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr12	12270558	G-T	Homo	INTERGENIC
SBS	Chr12	26302424	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2511218	2511219	1
Deletion	Chr5	2948142	2948144	2	OsKitaake05g034300
Deletion	Chr8	4211200	4211202	2
Deletion	Chr1	13240405	13240430	25
Deletion	Chr9	13892389	13892392	3
Deletion	Chr10	15415821	15415829	8
Deletion	Chr3	19228504	19228508	4
Deletion	Chr3	20634733	20634735	2
Deletion	Chr6	21390560	21390563	3
Deletion	Chr5	22854188	22854193	5
Deletion	Chr3	24634627	24634628	1
Deletion	Chr5	27742982	27742987	5	OsKitaake05g253900
Deletion	Chr1	29413341	29413347	6
Deletion	Chr1	30298001	30312000	13999	3
Deletion	Chr1	41900166	41900174	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	30219803	30310796	OsKitaake01g297500

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes