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| Mutant Information |
|---|
| Mutant Name | FN-275 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-275 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 25594479 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 25594481 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 8515562 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 30322066 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 14027004 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 24517309 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14775200 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 15213641 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 35887642 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 36635462 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 3169951 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 22584889 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 15226943 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 16163700 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 26039409 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 830400 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13093070 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 18466920 | T-A | Hetero | INTRON | |
| SBS | Chr10 | 3074709 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 1063689 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 8432262 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g091900 |
| SBS | Chr11 | 8779263 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 3475161 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7810147 | T-A | Hetero | INTRON | |
| SBS | Chr12 | 16735705 | G-A | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 457855 | 457856 | 1 | OsKitaake09g003700 |
| Deletion | Chr12 | 622035 | 622039 | 4 | |
| Deletion | Chr3 | 1671107 | 1671114 | 7 | |
| Deletion | Chr9 | 6392069 | 6392085 | 16 | |
| Deletion | Chr11 | 6443336 | 6443341 | 5 | |
| Deletion | Chr5 | 6971608 | 6971611 | 3 | |
| Deletion | Chr11 | 10000635 | 10000638 | 3 | |
| Deletion | Chr11 | 14548935 | 14548936 | 1 | |
| Deletion | Chr10 | 14931484 | 14931488 | 4 | |
| Deletion | Chr3 | 17998159 | 17998162 | 3 | |
| Deletion | Chr10 | 19240468 | 19240481 | 13 | |
| Deletion | Chr9 | 20318485 | 20318491 | 6 | |
| Deletion | Chr11 | 22230168 | 22230184 | 16 | |
| Deletion | Chr1 | 24827334 | 24827342 | 8 | |
| Deletion | Chr8 | 24868208 | 24868209 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 24011129 | 24011134 | 4 | |
| Insertion | Chr8 | 1411838 | 1411840 | 1 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 8517359 | Chr1 | 11987672 | OsKitaake01g147100 |
| Translocation | Chr9 | 8592365 | Chr1 | 11987683 | OsKitaake01g147100 |