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Mutant Information

Mutant Name	FN-277 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-277 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2470072 G-A Hetero INTERGENIC
SBS Chr1 12697684 G-T Hetero INTRON
SBS Chr1 28926420 G-A Hetero INTERGENIC
SBS Chr2 31126006 G-T Homo INTRON
SBS Chr2 33303318 C-T Homo INTERGENIC
SBS Chr3 15730285 G-A Homo INTERGENIC
SBS Chr4 11528549 A-G Hetero INTERGENIC
SBS Chr4 25594207 C-A Homo INTERGENIC
SBS Chr4 35951786 T-A Hetero INTERGENIC
SBS Chr6 1310101 C-T Hetero INTERGENIC
SBS Chr7 5419277 T-C Homo INTERGENIC
SBS Chr7 6953807 A-T Hetero INTERGENIC
SBS Chr7 10992435 C-T Homo INTRON
SBS Chr9 9231644 C-G Hetero INTERGENIC
SBS Chr10 3959054 A-G Homo INTERGENIC
SBS Chr10 6137321 T-C Hetero INTERGENIC
SBS Chr10 15689235 C-T Homo INTERGENIC
SBS Chr10 23796091 G-A Hetero INTERGENIC
SBS Chr11 14083470 T-C Hetero INTRON
SBS Chr11 17205211 T-C Hetero INTERGENIC
SBS Chr11 22090157 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g174400
SBS Chr11 27438883 T-C Hetero INTERGENIC
SBS Chr12 2009518 C-T Hetero SPLICE_SITE_DONOR OsKitaake12g031500
SBS Chr12 14751419 T-C Hetero INTERGENIC
SBS Chr12 25248285 C-G Hetero INTERGENIC
SBS Chr12 26556543 G-A Homo INTERGENIC
SBS Chr12 26826734 C-A Homo INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2165979 2165985 6 OsKitaake03g031100
Deletion Chr5 2233596 2233602 6
Deletion Chr2 2821293 2821306 13
Deletion Chr3 6425471 6425475 4
Deletion Chr5 6811718 6811719 1
Deletion Chr5 9119462 9119468 6
Deletion Chr1 9261002 9261003 1
Deletion Chr4 10432001 10444000 11999 OsKitaake04g055550
Deletion Chr1 10588262 10588273 11
Deletion Chr2 13231566 13231568 2
Deletion Chr11 13860134 13860135 1
Deletion Chr1 14681705 14681713 8
Deletion Chr1 14895764 14895767 3
Deletion Chr11 15130717 15130719 2
Deletion Chr10 17254823 17254827 4
Deletion Chr10 20630173 20630188 15
Deletion Chr11 21350349 21350351 2 OsKitaake11g168800
Deletion Chr5 21691380 21691386 6
Deletion Chr8 21696363 21696364 1
Deletion Chr6 25518647 25518648 1
Deletion Chr4 25594542 25594543 1
Deletion Chr5 25921847 25921852 5 OsKitaake05g228700
Deletion Chr2 34919058 34919080 22 OsKitaake02g364100
Deletion Chr1 40654697 40654706 9

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27872045 27872048 2
Insertion Chr1 36723632 36723635 2
Insertion Chr2 10699739 10699743 3

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3500307 Chr1 17717366
Translocation Chr8 3500313 Chr1 17717501
Translocation Chr4 17026234 Chr1 35189216
Translocation Chr4 17026508 Chr1 35189225
Translocation Chr12 23727262 Chr3 30230148 OsKitaake03g317000
Translocation Chr12 23727264 Chr3 30232684 OsKitaake03g317000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2470072	G-A	Hetero	INTERGENIC
SBS	Chr1	12697684	G-T	Hetero	INTRON
SBS	Chr1	28926420	G-A	Hetero	INTERGENIC
SBS	Chr2	31126006	G-T	Homo	INTRON
SBS	Chr2	33303318	C-T	Homo	INTERGENIC
SBS	Chr3	15730285	G-A	Homo	INTERGENIC
SBS	Chr4	11528549	A-G	Hetero	INTERGENIC
SBS	Chr4	25594207	C-A	Homo	INTERGENIC
SBS	Chr4	35951786	T-A	Hetero	INTERGENIC
SBS	Chr6	1310101	C-T	Hetero	INTERGENIC
SBS	Chr7	5419277	T-C	Homo	INTERGENIC
SBS	Chr7	6953807	A-T	Hetero	INTERGENIC
SBS	Chr7	10992435	C-T	Homo	INTRON
SBS	Chr9	9231644	C-G	Hetero	INTERGENIC
SBS	Chr10	3959054	A-G	Homo	INTERGENIC
SBS	Chr10	6137321	T-C	Hetero	INTERGENIC
SBS	Chr10	15689235	C-T	Homo	INTERGENIC
SBS	Chr10	23796091	G-A	Hetero	INTERGENIC
SBS	Chr11	14083470	T-C	Hetero	INTRON
SBS	Chr11	17205211	T-C	Hetero	INTERGENIC
SBS	Chr11	22090157	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g174400
SBS	Chr11	27438883	T-C	Hetero	INTERGENIC
SBS	Chr12	2009518	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake12g031500
SBS	Chr12	14751419	T-C	Hetero	INTERGENIC
SBS	Chr12	25248285	C-G	Hetero	INTERGENIC
SBS	Chr12	26556543	G-A	Homo	INTERGENIC
SBS	Chr12	26826734	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2165979	2165985	6	OsKitaake03g031100
Deletion	Chr5	2233596	2233602	6
Deletion	Chr2	2821293	2821306	13
Deletion	Chr3	6425471	6425475	4
Deletion	Chr5	6811718	6811719	1
Deletion	Chr5	9119462	9119468	6
Deletion	Chr1	9261002	9261003	1
Deletion	Chr4	10432001	10444000	11999	OsKitaake04g055550
Deletion	Chr1	10588262	10588273	11
Deletion	Chr2	13231566	13231568	2
Deletion	Chr11	13860134	13860135	1
Deletion	Chr1	14681705	14681713	8
Deletion	Chr1	14895764	14895767	3
Deletion	Chr11	15130717	15130719	2
Deletion	Chr10	17254823	17254827	4
Deletion	Chr10	20630173	20630188	15
Deletion	Chr11	21350349	21350351	2	OsKitaake11g168800
Deletion	Chr5	21691380	21691386	6
Deletion	Chr8	21696363	21696364	1
Deletion	Chr6	25518647	25518648	1
Deletion	Chr4	25594542	25594543	1
Deletion	Chr5	25921847	25921852	5	OsKitaake05g228700
Deletion	Chr2	34919058	34919080	22	OsKitaake02g364100
Deletion	Chr1	40654697	40654706	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3500307	Chr1	17717366
Translocation	Chr8	3500313	Chr1	17717501
Translocation	Chr4	17026234	Chr1	35189216
Translocation	Chr4	17026508	Chr1	35189225
Translocation	Chr12	23727262	Chr3	30230148	OsKitaake03g317000
Translocation	Chr12	23727264	Chr3	30232684	OsKitaake03g317000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes