Search Kitaake

Mutant Information

Mutant Name	FN-278 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-278 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1481033 A-G Hetero SPLICE_SITE_REGION
SBS Chr1 7231394 T-A Hetero INTRON
SBS Chr1 7231396 T-A Hetero INTRON
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr2 4277380 C-T Hetero INTRON
SBS Chr2 8129021 C-T Hetero INTERGENIC
SBS Chr2 14060501 G-C Hetero INTERGENIC
SBS Chr3 25990259 C-A Hetero INTERGENIC
SBS Chr3 34989539 G-A Homo INTRON
SBS Chr4 8082895 T-C Hetero INTRON
SBS Chr4 10313650 T-G Hetero INTERGENIC
SBS Chr4 13141587 T-A Hetero INTERGENIC
SBS Chr5 248867 G-A Hetero INTERGENIC
SBS Chr5 7622632 G-T Hetero INTERGENIC
SBS Chr5 10235133 C-T Hetero INTERGENIC
SBS Chr5 19573587 T-G Hetero INTERGENIC
SBS Chr5 20280332 T-A Hetero INTERGENIC
SBS Chr6 3797215 A-G Hetero INTERGENIC
SBS Chr6 11533332 C-T Homo INTERGENIC
SBS Chr6 19762197 G-A Hetero INTERGENIC
SBS Chr6 27292254 G-A Hetero INTERGENIC
SBS Chr6 29120780 G-T Hetero INTERGENIC
SBS Chr7 2155289 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 5853519 C-T Hetero INTERGENIC
SBS Chr8 18764781 A-G Homo INTERGENIC
SBS Chr8 22218548 T-C Homo UTR_3_PRIME
SBS Chr9 2193405 T-C Homo INTERGENIC
SBS Chr10 505175 C-A Hetero INTERGENIC
SBS Chr11 1119632 C-T Hetero INTERGENIC
SBS Chr11 1214134 A-T Hetero INTERGENIC
SBS Chr11 1214135 A-T Hetero INTERGENIC
SBS Chr11 3435967 C-T Hetero INTERGENIC
SBS Chr11 13212455 T-G Hetero INTERGENIC
SBS Chr11 13679253 G-A Hetero INTERGENIC
SBS Chr11 16593688 T-A Hetero INTERGENIC
SBS Chr11 20785232 T-A Hetero INTERGENIC
SBS Chr12 17087807 C-T Hetero INTERGENIC
SBS Chr12 18352136 C-T Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1526313 1526314 1
Deletion Chr9 1813344 1813352 8
Deletion Chr9 2367102 2367103 1
Deletion Chr5 5693126 5693134 8
Deletion Chr2 7696642 7696660 18
Deletion Chr7 9200090 9200093 3
Deletion Chr6 11411425 11411431 6
Deletion Chr11 12731585 12731592 7
Deletion Chr12 13069341 13069351 10
Deletion Chr12 13076073 13076098 25
Deletion Chr7 13656339 13656341 2
Deletion Chr2 14047311 14047317 6
Deletion Chr6 16783062 16783067 5 OsKitaake06g158400
Deletion Chr1 17528442 17528444 2
Deletion Chr11 20585843 20585844 1
Deletion Chr5 22669217 22669221 4
Deletion Chr3 23728947 23728961 14
Deletion Chr5 24482189 24482190 1
Deletion Chr7 29174944 29174948 4
Deletion Chr1 30654285 30654286 1
Deletion Chr1 30793370 30793379 9

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 22924272 22960768 2
Inversion Chr10 22924287 22960772 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1481033	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr1	7231394	T-A	Hetero	INTRON
SBS	Chr1	7231396	T-A	Hetero	INTRON
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr2	4277380	C-T	Hetero	INTRON
SBS	Chr2	8129021	C-T	Hetero	INTERGENIC
SBS	Chr2	14060501	G-C	Hetero	INTERGENIC
SBS	Chr3	25990259	C-A	Hetero	INTERGENIC
SBS	Chr3	34989539	G-A	Homo	INTRON
SBS	Chr4	8082895	T-C	Hetero	INTRON
SBS	Chr4	10313650	T-G	Hetero	INTERGENIC
SBS	Chr4	13141587	T-A	Hetero	INTERGENIC
SBS	Chr5	248867	G-A	Hetero	INTERGENIC
SBS	Chr5	7622632	G-T	Hetero	INTERGENIC
SBS	Chr5	10235133	C-T	Hetero	INTERGENIC
SBS	Chr5	19573587	T-G	Hetero	INTERGENIC
SBS	Chr5	20280332	T-A	Hetero	INTERGENIC
SBS	Chr6	3797215	A-G	Hetero	INTERGENIC
SBS	Chr6	11533332	C-T	Homo	INTERGENIC
SBS	Chr6	19762197	G-A	Hetero	INTERGENIC
SBS	Chr6	27292254	G-A	Hetero	INTERGENIC
SBS	Chr6	29120780	G-T	Hetero	INTERGENIC
SBS	Chr7	2155289	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	5853519	C-T	Hetero	INTERGENIC
SBS	Chr8	18764781	A-G	Homo	INTERGENIC
SBS	Chr8	22218548	T-C	Homo	UTR_3_PRIME
SBS	Chr9	2193405	T-C	Homo	INTERGENIC
SBS	Chr10	505175	C-A	Hetero	INTERGENIC
SBS	Chr11	1119632	C-T	Hetero	INTERGENIC
SBS	Chr11	1214134	A-T	Hetero	INTERGENIC
SBS	Chr11	1214135	A-T	Hetero	INTERGENIC
SBS	Chr11	3435967	C-T	Hetero	INTERGENIC
SBS	Chr11	13212455	T-G	Hetero	INTERGENIC
SBS	Chr11	13679253	G-A	Hetero	INTERGENIC
SBS	Chr11	16593688	T-A	Hetero	INTERGENIC
SBS	Chr11	20785232	T-A	Hetero	INTERGENIC
SBS	Chr12	17087807	C-T	Hetero	INTERGENIC
SBS	Chr12	18352136	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1526313	1526314	1
Deletion	Chr9	1813344	1813352	8
Deletion	Chr9	2367102	2367103	1
Deletion	Chr5	5693126	5693134	8
Deletion	Chr2	7696642	7696660	18
Deletion	Chr7	9200090	9200093	3
Deletion	Chr6	11411425	11411431	6
Deletion	Chr11	12731585	12731592	7
Deletion	Chr12	13069341	13069351	10
Deletion	Chr12	13076073	13076098	25
Deletion	Chr7	13656339	13656341	2
Deletion	Chr2	14047311	14047317	6
Deletion	Chr6	16783062	16783067	5	OsKitaake06g158400
Deletion	Chr1	17528442	17528444	2
Deletion	Chr11	20585843	20585844	1
Deletion	Chr5	22669217	22669221	4
Deletion	Chr3	23728947	23728961	14
Deletion	Chr5	24482189	24482190	1
Deletion	Chr7	29174944	29174948	4
Deletion	Chr1	30654285	30654286	1
Deletion	Chr1	30793370	30793379	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	22924272	22960768	2
Inversion	Chr10	22924287	22960772	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes