Search Kitaake

Mutant Information

Mutant Name	FN-279 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-279 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27613758 A-T Homo INTRON
SBS Chr1 33704049 G-T Hetero UTR_3_PRIME
SBS Chr1 33704050 C-T Hetero UTR_3_PRIME
SBS Chr1 33797222 C-A Hetero INTRON
SBS Chr1 33797223 T-A Hetero INTRON
SBS Chr1 42179700 C-T Homo INTERGENIC
SBS Chr2 8015106 C-T Hetero INTERGENIC
SBS Chr2 26653920 T-A Hetero INTERGENIC
SBS Chr2 29044507 C-A Hetero UTR_3_PRIME
SBS Chr3 9231982 G-A Hetero INTERGENIC
SBS Chr3 20937802 T-A Homo INTERGENIC
SBS Chr3 29939191 C-G Hetero INTRON
SBS Chr3 36973338 A-G Hetero INTERGENIC
SBS Chr4 1858568 A-G Homo INTERGENIC
SBS Chr4 9824150 A-G Homo INTERGENIC
SBS Chr4 17869794 T-C Homo INTERGENIC
SBS Chr4 23440562 G-T Hetero START_GAINED
SBS Chr5 1446237 C-T Hetero INTERGENIC
SBS Chr5 29899842 T-A Homo INTRON
SBS Chr6 2625633 C-T Homo SYNONYMOUS_CODING
SBS Chr6 9910490 T-C Hetero INTERGENIC
SBS Chr7 18887940 A-T Hetero INTERGENIC
SBS Chr8 20739506 C-T Homo INTERGENIC
SBS Chr9 1913036 A-T Hetero INTERGENIC
SBS Chr9 7230397 A-G Hetero INTERGENIC
SBS Chr9 9576124 C-T Homo INTERGENIC
SBS Chr9 17928017 G-A Hetero INTERGENIC
SBS Chr9 17930451 G-A Hetero INTERGENIC
SBS Chr9 21412126 C-T Homo NON_SYNONYMOUS_CODING OsKitaake09g186300
SBS Chr10 5106545 G-A Hetero INTERGENIC
SBS Chr10 15294854 T-C Hetero INTERGENIC
SBS Chr10 18262759 C-T Hetero INTERGENIC
SBS Chr10 19410641 G-A Hetero INTERGENIC
SBS Chr10 23582391 C-T Hetero START_GAINED
SBS Chr11 4882858 C-A Hetero INTERGENIC
SBS Chr11 10302288 T-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4166170 4166180 10
Deletion Chr9 4628911 4629084 173
Deletion Chr7 6153753 6153756 3
Deletion Chr7 6948050 6948055 5
Deletion Chr12 6980086 6980104 18
Deletion Chr2 8026753 8026762 9
Deletion Chr12 15239446 15239449 3
Deletion Chr10 19333897 19333904 7
Deletion Chr12 21951986 21952005 19
Deletion Chr8 25084702 25084704 2
Deletion Chr8 25827200 25827201 1
Deletion Chr6 28221741 28221752 11
Deletion Chr5 28516780 28516781 1
Deletion Chr7 29546727 29546729 2
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr1 32703159 32703160 1
Deletion Chr3 34995951 34995956 5
Deletion Chr2 35016590 35016592 2 OsKitaake02g365900
Deletion Chr2 35619891 35619896 5
Deletion Chr4 35688840 35688841 1 OsKitaake04g304800
Deletion Chr1 41465158 41465177 19

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18774553 18774556 2
Insertion Chr3 5363087 5363090 2
Insertion Chr6 13095620 13095623 2
Insertion Chr6 22539232 22539235 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 9423424 Chr4 987503 2
Translocation Chr9 17925132 Chr1 5715163
Translocation Chr9 17925135 Chr5 16992383 OsKitaake05g130400
Translocation Chr9 17931317 Chr1 5715178
Translocation Chr9 17931320 Chr5 16992400 OsKitaake05g130400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27613758	A-T	Homo	INTRON
SBS	Chr1	33704049	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	33704050	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	33797222	C-A	Hetero	INTRON
SBS	Chr1	33797223	T-A	Hetero	INTRON
SBS	Chr1	42179700	C-T	Homo	INTERGENIC
SBS	Chr2	8015106	C-T	Hetero	INTERGENIC
SBS	Chr2	26653920	T-A	Hetero	INTERGENIC
SBS	Chr2	29044507	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	9231982	G-A	Hetero	INTERGENIC
SBS	Chr3	20937802	T-A	Homo	INTERGENIC
SBS	Chr3	29939191	C-G	Hetero	INTRON
SBS	Chr3	36973338	A-G	Hetero	INTERGENIC
SBS	Chr4	1858568	A-G	Homo	INTERGENIC
SBS	Chr4	9824150	A-G	Homo	INTERGENIC
SBS	Chr4	17869794	T-C	Homo	INTERGENIC
SBS	Chr4	23440562	G-T	Hetero	START_GAINED
SBS	Chr5	1446237	C-T	Hetero	INTERGENIC
SBS	Chr5	29899842	T-A	Homo	INTRON
SBS	Chr6	2625633	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	9910490	T-C	Hetero	INTERGENIC
SBS	Chr7	18887940	A-T	Hetero	INTERGENIC
SBS	Chr8	20739506	C-T	Homo	INTERGENIC
SBS	Chr9	1913036	A-T	Hetero	INTERGENIC
SBS	Chr9	7230397	A-G	Hetero	INTERGENIC
SBS	Chr9	9576124	C-T	Homo	INTERGENIC
SBS	Chr9	17928017	G-A	Hetero	INTERGENIC
SBS	Chr9	17930451	G-A	Hetero	INTERGENIC
SBS	Chr9	21412126	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g186300
SBS	Chr10	5106545	G-A	Hetero	INTERGENIC
SBS	Chr10	15294854	T-C	Hetero	INTERGENIC
SBS	Chr10	18262759	C-T	Hetero	INTERGENIC
SBS	Chr10	19410641	G-A	Hetero	INTERGENIC
SBS	Chr10	23582391	C-T	Hetero	START_GAINED
SBS	Chr11	4882858	C-A	Hetero	INTERGENIC
SBS	Chr11	10302288	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4166170	4166180	10
Deletion	Chr9	4628911	4629084	173
Deletion	Chr7	6153753	6153756	3
Deletion	Chr7	6948050	6948055	5
Deletion	Chr12	6980086	6980104	18
Deletion	Chr2	8026753	8026762	9
Deletion	Chr12	15239446	15239449	3
Deletion	Chr10	19333897	19333904	7
Deletion	Chr12	21951986	21952005	19
Deletion	Chr8	25084702	25084704	2
Deletion	Chr8	25827200	25827201	1
Deletion	Chr6	28221741	28221752	11
Deletion	Chr5	28516780	28516781	1
Deletion	Chr7	29546727	29546729	2
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr1	32703159	32703160	1
Deletion	Chr3	34995951	34995956	5
Deletion	Chr2	35016590	35016592	2	OsKitaake02g365900
Deletion	Chr2	35619891	35619896	5
Deletion	Chr4	35688840	35688841	1	OsKitaake04g304800
Deletion	Chr1	41465158	41465177	19

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	9423424	Chr4	987503	2
Translocation	Chr9	17925132	Chr1	5715163
Translocation	Chr9	17925135	Chr5	16992383	OsKitaake05g130400
Translocation	Chr9	17931317	Chr1	5715178
Translocation	Chr9	17931320	Chr5	16992400	OsKitaake05g130400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes