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| Mutant Information |
|---|
| Mutant Name | FN-28 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-28 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27964911 | A-G | Homo | INTRON | |
| SBS | Chr1 | 34407571 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g357601 |
| SBS | Chr2 | 18484562 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 20206301 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1287753 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 20607839 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 3312588 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 7462140 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 14980703 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 20097560 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 20620473 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21647091 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 18705463 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 20309719 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 4867385 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17206621 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 15413999 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20450854 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 719700 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 22396000 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 12832579 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 27380135 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 18954866 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 27055543 | G-A | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 4587021 | 4587022 | 1 | OsKitaake05g053100 |
| Deletion | Chr12 | 6162636 | 6162637 | 1 | |
| Deletion | Chr6 | 9502790 | 9502816 | 26 | |
| Deletion | Chr4 | 12423762 | 12423766 | 4 | |
| Deletion | Chr11 | 12508945 | 12508946 | 1 | |
| Deletion | Chr11 | 12699550 | 12699564 | 14 | |
| Deletion | Chr9 | 13171001 | 13191000 | 19999 | |
| Deletion | Chr11 | 13546170 | 13546171 | 1 | |
| Deletion | Chr2 | 15447313 | 15447315 | 2 | OsKitaake02g160300 |
| Deletion | Chr1 | 16950063 | 16950065 | 2 | |
| Deletion | Chr2 | 17986232 | 17986244 | 12 | |
| Deletion | Chr6 | 18929521 | 18929522 | 1 | |
| Deletion | Chr3 | 19362824 | 19362831 | 7 | |
| Deletion | Chr1 | 23494098 | 23494099 | 1 | |
| Deletion | Chr5 | 25487057 | 25487064 | 7 | OsKitaake05g222900 |
| Deletion | Chr3 | 33622896 | 33622898 | 2 | OsKitaake03g361100 |
| Deletion | Chr2 | 36115070 | 36115073 | 3 | OsKitaake02g380700 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 14895758 | 14895760 | 1 | |
| Insertion | Chr1 | 39814436 | 39814438 | 1 |