Search Kitaake

Mutant Information

Mutant Name	FN-281 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-281 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 521329 G-A Hetero INTERGENIC
SBS Chr1 521330 G-A Hetero INTERGENIC
SBS Chr1 1401568 G-A Hetero INTERGENIC
SBS Chr1 5265482 T-A Hetero INTERGENIC
SBS Chr1 11061400 C-T Hetero INTERGENIC
SBS Chr1 15122328 C-T Hetero INTERGENIC
SBS Chr1 21009503 T-C Homo INTERGENIC
SBS Chr1 25546561 C-A Hetero INTRON
SBS Chr1 42207759 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g464400
SBS Chr2 3636071 G-A Hetero INTERGENIC
SBS Chr2 26975721 C-T Hetero INTERGENIC
SBS Chr2 29297596 T-A Hetero INTERGENIC
SBS Chr3 12056283 G-T Hetero INTERGENIC
SBS Chr3 12143272 G-A Hetero INTRON
SBS Chr3 15700284 T-A Hetero INTERGENIC
SBS Chr3 17841547 C-T Hetero UTR_3_PRIME
SBS Chr3 25630035 G-A Hetero INTERGENIC
SBS Chr3 28349152 A-T Hetero INTRON
SBS Chr3 36550027 T-C Hetero INTRON
SBS Chr4 18462295 C-T Homo INTERGENIC
SBS Chr4 25477642 T-C Homo INTERGENIC
SBS Chr4 36793141 C-A Hetero UTR_3_PRIME
SBS Chr5 641334 C-T Hetero INTERGENIC
SBS Chr5 17806295 C-A Hetero INTERGENIC
SBS Chr5 22024057 A-G Hetero INTERGENIC
SBS Chr6 7506006 A-G Hetero INTERGENIC
SBS Chr6 18892521 C-T Hetero INTERGENIC
SBS Chr6 19832034 C-T Homo INTERGENIC
SBS Chr7 24845971 C-T Hetero INTERGENIC
SBS Chr8 2081669 T-G Hetero INTERGENIC
SBS Chr8 12372044 A-T Hetero INTERGENIC
SBS Chr8 15787761 G-A Homo INTERGENIC
SBS Chr9 1294772 T-C Hetero INTERGENIC
SBS Chr9 4163529 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g022700
SBS Chr9 8659811 C-G Hetero INTERGENIC
SBS Chr9 10665015 G-A Hetero INTERGENIC
SBS Chr9 15619217 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g110400
SBS Chr9 15619223 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g110400
SBS Chr9 18661965 C-T Hetero INTERGENIC
SBS Chr11 21641394 T-A Hetero INTERGENIC
SBS Chr11 25207448 T-C Homo INTERGENIC
SBS Chr12 9717896 C-T Hetero INTERGENIC
SBS Chr12 18165328 A-G Hetero INTERGENIC
SBS Chr12 21753556 C-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1942324 1942329 5 OsKitaake05g022000
Deletion Chr1 5494586 5494593 7
Deletion Chr3 6230486 6230490 4
Deletion Chr9 8852815 8852818 3
Deletion Chr5 9155544 9155640 96
Deletion Chr8 9517532 9517533 1
Deletion Chr8 10753234 10753236 2
Deletion Chr11 11440137 11440141 4
Deletion Chr8 12315163 12315166 3
Deletion Chr5 13608130 13608133 3
Deletion Chr1 13644121 13644122 1
Deletion Chr1 13830677 13830683 6
Deletion Chr4 19626322 19626325 3
Deletion Chr9 20004404 20004405 1
Deletion Chr8 21524779 21524791 12
Deletion Chr2 25641781 25641789 8
Deletion Chr7 27106763 27106851 88
Deletion Chr1 30237835 30237836 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 12997347 13492212 OsKitaake04g064600
Inversion Chr4 12997355 13492218 OsKitaake04g064600
Inversion Chr2 20707418 21336657 OsKitaake02g205700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 28389278 Chr3 2100646 OsKitaake08g240100
Translocation Chr8 28389824 Chr3 2097590

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	521329	G-A	Hetero	INTERGENIC
SBS	Chr1	521330	G-A	Hetero	INTERGENIC
SBS	Chr1	1401568	G-A	Hetero	INTERGENIC
SBS	Chr1	5265482	T-A	Hetero	INTERGENIC
SBS	Chr1	11061400	C-T	Hetero	INTERGENIC
SBS	Chr1	15122328	C-T	Hetero	INTERGENIC
SBS	Chr1	21009503	T-C	Homo	INTERGENIC
SBS	Chr1	25546561	C-A	Hetero	INTRON
SBS	Chr1	42207759	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g464400
SBS	Chr2	3636071	G-A	Hetero	INTERGENIC
SBS	Chr2	26975721	C-T	Hetero	INTERGENIC
SBS	Chr2	29297596	T-A	Hetero	INTERGENIC
SBS	Chr3	12056283	G-T	Hetero	INTERGENIC
SBS	Chr3	12143272	G-A	Hetero	INTRON
SBS	Chr3	15700284	T-A	Hetero	INTERGENIC
SBS	Chr3	17841547	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	25630035	G-A	Hetero	INTERGENIC
SBS	Chr3	28349152	A-T	Hetero	INTRON
SBS	Chr3	36550027	T-C	Hetero	INTRON
SBS	Chr4	18462295	C-T	Homo	INTERGENIC
SBS	Chr4	25477642	T-C	Homo	INTERGENIC
SBS	Chr4	36793141	C-A	Hetero	UTR_3_PRIME
SBS	Chr5	641334	C-T	Hetero	INTERGENIC
SBS	Chr5	17806295	C-A	Hetero	INTERGENIC
SBS	Chr5	22024057	A-G	Hetero	INTERGENIC
SBS	Chr6	7506006	A-G	Hetero	INTERGENIC
SBS	Chr6	18892521	C-T	Hetero	INTERGENIC
SBS	Chr6	19832034	C-T	Homo	INTERGENIC
SBS	Chr7	24845971	C-T	Hetero	INTERGENIC
SBS	Chr8	2081669	T-G	Hetero	INTERGENIC
SBS	Chr8	12372044	A-T	Hetero	INTERGENIC
SBS	Chr8	15787761	G-A	Homo	INTERGENIC
SBS	Chr9	1294772	T-C	Hetero	INTERGENIC
SBS	Chr9	4163529	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g022700
SBS	Chr9	8659811	C-G	Hetero	INTERGENIC
SBS	Chr9	10665015	G-A	Hetero	INTERGENIC
SBS	Chr9	15619217	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g110400
SBS	Chr9	15619223	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g110400
SBS	Chr9	18661965	C-T	Hetero	INTERGENIC
SBS	Chr11	21641394	T-A	Hetero	INTERGENIC
SBS	Chr11	25207448	T-C	Homo	INTERGENIC
SBS	Chr12	9717896	C-T	Hetero	INTERGENIC
SBS	Chr12	18165328	A-G	Hetero	INTERGENIC
SBS	Chr12	21753556	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1942324	1942329	5	OsKitaake05g022000
Deletion	Chr1	5494586	5494593	7
Deletion	Chr3	6230486	6230490	4
Deletion	Chr9	8852815	8852818	3
Deletion	Chr5	9155544	9155640	96
Deletion	Chr8	9517532	9517533	1
Deletion	Chr8	10753234	10753236	2
Deletion	Chr11	11440137	11440141	4
Deletion	Chr8	12315163	12315166	3
Deletion	Chr5	13608130	13608133	3
Deletion	Chr1	13644121	13644122	1
Deletion	Chr1	13830677	13830683	6
Deletion	Chr4	19626322	19626325	3
Deletion	Chr9	20004404	20004405	1
Deletion	Chr8	21524779	21524791	12
Deletion	Chr2	25641781	25641789	8
Deletion	Chr7	27106763	27106851	88
Deletion	Chr1	30237835	30237836	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	12997347	13492212	OsKitaake04g064600
Inversion	Chr4	12997355	13492218	OsKitaake04g064600
Inversion	Chr2	20707418	21336657	OsKitaake02g205700

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes