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Mutant Information

Mutant Name	FN-283 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-283 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25967878 A-G Homo INTERGENIC
SBS Chr1 37913859 C-T Hetero INTERGENIC
SBS Chr2 14428026 A-G Hetero INTERGENIC
SBS Chr2 14428027 A-T Hetero INTERGENIC
SBS Chr2 15327501 A-G Hetero INTERGENIC
SBS Chr2 18764062 G-C Hetero INTERGENIC
SBS Chr2 20262146 A-G Hetero UTR_3_PRIME
SBS Chr2 21720528 C-T Hetero INTERGENIC
SBS Chr3 15416049 A-G Hetero INTERGENIC
SBS Chr3 20909564 C-T Hetero INTERGENIC
SBS Chr4 14074651 C-T Hetero INTERGENIC
SBS Chr4 19338928 C-T Hetero INTERGENIC
SBS Chr4 20182705 C-A Hetero INTERGENIC
SBS Chr4 26055254 G-A Homo INTERGENIC
SBS Chr4 30302450 G-A Homo INTERGENIC
SBS Chr5 7921255 G-A Homo INTERGENIC
SBS Chr5 8884520 G-A Hetero INTERGENIC
SBS Chr5 16873196 G-T Homo INTERGENIC
SBS Chr5 19640998 C-T Hetero SPLICE_SITE_REGION
SBS Chr6 8463356 G-A Homo INTERGENIC
SBS Chr6 8783802 G-A Hetero INTERGENIC
SBS Chr6 15512214 A-C Hetero INTERGENIC
SBS Chr6 23911448 T-C Homo INTERGENIC
SBS Chr6 29828035 G-A Hetero INTERGENIC
SBS Chr7 4609615 A-G Homo NON_SYNONYMOUS_CODING OsKitaake07g057300
SBS Chr7 17098562 G-A Hetero INTRON
SBS Chr7 21886832 A-G Hetero INTERGENIC
SBS Chr7 22953279 T-A Hetero INTRON
SBS Chr7 28251448 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g267000
SBS Chr7 28251450 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g267000
SBS Chr8 7746779 T-A Homo INTERGENIC
SBS Chr8 14109808 G-A Homo INTERGENIC
SBS Chr9 10297339 C-T Hetero INTERGENIC
SBS Chr10 63894 C-A Hetero INTERGENIC
SBS Chr10 10922939 G-C Homo INTERGENIC
SBS Chr10 17547016 G-A Homo INTERGENIC
SBS Chr10 22351432 G-T Homo INTERGENIC
SBS Chr10 24058346 C-A Hetero #VALUE!
SBS Chr11 8504014 C-A Hetero INTERGENIC
SBS Chr11 22766291 G-A Hetero INTERGENIC
SBS Chr12 6229559 C-T Hetero START_GAINED

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1980374 1980375 1
Deletion Chr1 2788794 2788795 1
Deletion Chr6 3527057 3527076 19
Deletion Chr2 4605200 4605202 2
Deletion Chr8 11403894 11403905 11
Deletion Chr11 15811632 15811633 1
Deletion Chr5 18662358 18662364 6
Deletion Chr3 19034159 19034161 2
Deletion Chr2 21075031 21075036 5
Deletion Chr2 27047492 27047499 7
Deletion Chr3 28633499 28633503 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 9907834 9914369

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25967878	A-G	Homo	INTERGENIC
SBS	Chr1	37913859	C-T	Hetero	INTERGENIC
SBS	Chr2	14428026	A-G	Hetero	INTERGENIC
SBS	Chr2	14428027	A-T	Hetero	INTERGENIC
SBS	Chr2	15327501	A-G	Hetero	INTERGENIC
SBS	Chr2	18764062	G-C	Hetero	INTERGENIC
SBS	Chr2	20262146	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	21720528	C-T	Hetero	INTERGENIC
SBS	Chr3	15416049	A-G	Hetero	INTERGENIC
SBS	Chr3	20909564	C-T	Hetero	INTERGENIC
SBS	Chr4	14074651	C-T	Hetero	INTERGENIC
SBS	Chr4	19338928	C-T	Hetero	INTERGENIC
SBS	Chr4	20182705	C-A	Hetero	INTERGENIC
SBS	Chr4	26055254	G-A	Homo	INTERGENIC
SBS	Chr4	30302450	G-A	Homo	INTERGENIC
SBS	Chr5	7921255	G-A	Homo	INTERGENIC
SBS	Chr5	8884520	G-A	Hetero	INTERGENIC
SBS	Chr5	16873196	G-T	Homo	INTERGENIC
SBS	Chr5	19640998	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr6	8463356	G-A	Homo	INTERGENIC
SBS	Chr6	8783802	G-A	Hetero	INTERGENIC
SBS	Chr6	15512214	A-C	Hetero	INTERGENIC
SBS	Chr6	23911448	T-C	Homo	INTERGENIC
SBS	Chr6	29828035	G-A	Hetero	INTERGENIC
SBS	Chr7	4609615	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g057300
SBS	Chr7	17098562	G-A	Hetero	INTRON
SBS	Chr7	21886832	A-G	Hetero	INTERGENIC
SBS	Chr7	22953279	T-A	Hetero	INTRON
SBS	Chr7	28251448	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g267000
SBS	Chr7	28251450	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g267000
SBS	Chr8	7746779	T-A	Homo	INTERGENIC
SBS	Chr8	14109808	G-A	Homo	INTERGENIC
SBS	Chr9	10297339	C-T	Hetero	INTERGENIC
SBS	Chr10	63894	C-A	Hetero	INTERGENIC
SBS	Chr10	10922939	G-C	Homo	INTERGENIC
SBS	Chr10	17547016	G-A	Homo	INTERGENIC
SBS	Chr10	22351432	G-T	Homo	INTERGENIC
SBS	Chr10	24058346	C-A	Hetero	#VALUE!
SBS	Chr11	8504014	C-A	Hetero	INTERGENIC
SBS	Chr11	22766291	G-A	Hetero	INTERGENIC
SBS	Chr12	6229559	C-T	Hetero	START_GAINED

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1980374	1980375	1
Deletion	Chr1	2788794	2788795	1
Deletion	Chr6	3527057	3527076	19
Deletion	Chr2	4605200	4605202	2
Deletion	Chr8	11403894	11403905	11
Deletion	Chr11	15811632	15811633	1
Deletion	Chr5	18662358	18662364	6
Deletion	Chr3	19034159	19034161	2
Deletion	Chr2	21075031	21075036	5
Deletion	Chr2	27047492	27047499	7
Deletion	Chr3	28633499	28633503	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9907834	9914369

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes