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| Mutant Information |
|---|
| Mutant Name | FN-284 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-284 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 10799663 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 16703168 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 19001458 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 30073865 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 5045375 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 5045376 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6241050 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 13497605 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 16916077 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 26924838 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26924839 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 29584963 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g281600 |
| SBS | Chr6 | 16691663 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 16359170 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13249411 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 23306321 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 19334621 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g156800 |
| SBS | Chr9 | 19703932 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 22469133 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 3302398 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11819383 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 13404253 | G-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 921669 | 921670 | 1 | |
| Deletion | Chr7 | 2912681 | 2912683 | 2 | |
| Deletion | Chr12 | 4232969 | 4232977 | 8 | |
| Deletion | Chr12 | 7642785 | 7642790 | 5 | |
| Deletion | Chr5 | 13213031 | 13213036 | 5 | |
| Deletion | Chr1 | 15166138 | 15166154 | 16 | |
| Deletion | Chr7 | 16865003 | 16865007 | 4 | |
| Deletion | Chr11 | 21958123 | 21958127 | 4 | OsKitaake11g173800 |
| Deletion | Chr2 | 24849001 | 24914000 | 64999 | |
| Deletion | Chr5 | 27913001 | 27924000 | 10999 | OsKitaake05g256800 |
| Deletion | Chr2 | 30594146 | 30594147 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 7810494 | 7810497 | 2 | |
| Insertion | Chr10 | 22740920 | 22740923 | 2 | |
| Insertion | Chr10 | 23200010 | 23200013 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 12969564 | 13533685 | OsKitaake02g149500 |
| Inversion | Chr2 | 12969579 | 13533698 | OsKitaake02g149500 |