Search Kitaake

Mutant Information

Mutant Name	FN-285 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-285 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6098226 C-T Homo INTERGENIC
SBS Chr1 10012724 T-A Hetero INTERGENIC
SBS Chr1 10524532 A-G Hetero INTERGENIC
SBS Chr1 19946518 G-A Hetero INTERGENIC
SBS Chr1 20052059 G-A Hetero INTERGENIC
SBS Chr2 1083819 G-A Hetero INTERGENIC
SBS Chr2 5931868 A-T Hetero INTERGENIC
SBS Chr2 16976151 G-C Hetero INTERGENIC
SBS Chr3 11249214 A-T Hetero INTERGENIC
SBS Chr3 23503144 C-T Hetero INTERGENIC
SBS Chr3 33785775 A-G Hetero INTERGENIC
SBS Chr4 1899727 G-T Homo INTERGENIC
SBS Chr4 1899728 A-T Homo INTERGENIC
SBS Chr4 4201267 C-T Homo INTERGENIC
SBS Chr4 13970927 G-T Homo SYNONYMOUS_CODING
SBS Chr4 14982406 T-A Homo INTERGENIC
SBS Chr4 27547971 C-T Homo INTERGENIC
SBS Chr5 3733711 T-C Hetero SYNONYMOUS_CODING
SBS Chr5 5390514 A-G Homo INTERGENIC
SBS Chr5 14148844 C-T Hetero INTERGENIC
SBS Chr6 3267695 G-C Homo INTRON
SBS Chr6 4253741 A-T Homo INTRON
SBS Chr6 4253743 C-T Homo INTRON
SBS Chr6 10395226 G-A Homo INTERGENIC
SBS Chr6 14165106 C-T Homo INTERGENIC
SBS Chr6 26832228 G-A Homo INTERGENIC
SBS Chr7 11366703 G-T Hetero INTERGENIC
SBS Chr7 13138727 T-C Hetero INTERGENIC
SBS Chr8 8680955 C-T Homo INTERGENIC
SBS Chr8 12768809 C-A Hetero INTERGENIC
SBS Chr8 12768810 C-A Hetero INTERGENIC
SBS Chr8 18580405 A-G Hetero INTERGENIC
SBS Chr8 25201774 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g196500
SBS Chr8 29081139 T-C Homo INTRON
SBS Chr9 4783705 A-G Homo INTERGENIC
SBS Chr9 8684049 G-A Hetero INTERGENIC
SBS Chr9 9392287 G-C Homo INTERGENIC
SBS Chr9 22430020 C-A Homo INTRON
SBS Chr10 9413564 C-T Hetero INTRON
SBS Chr10 14858819 T-A Hetero INTERGENIC
SBS Chr10 22971376 G-A Hetero INTERGENIC
SBS Chr11 9631296 G-A Hetero INTERGENIC
SBS Chr11 11826067 C-T Hetero INTERGENIC
SBS Chr11 28728852 T-A Hetero INTERGENIC
SBS Chr12 6760736 A-T Hetero INTERGENIC
SBS Chr12 7689462 G-T Hetero INTERGENIC
SBS Chr12 8569215 A-C Hetero INTERGENIC
SBS Chr12 22945580 T-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3530766 3530767 1
Deletion Chr7 5564949 5564951 2
Deletion Chr9 5620089 5620093 4
Deletion Chr10 6746436 6746438 2
Deletion Chr12 8555047 8555050 3
Deletion Chr9 9840213 9840214 1
Deletion Chr10 10320406 10320410 4
Deletion Chr5 13967175 13967176 1
Deletion Chr7 18531580 18531587 7
Deletion Chr12 18748001 18837000 88999 3
Deletion Chr10 22012416 22012418 2
Deletion Chr8 23715293 23715295 2
Deletion Chr1 26742214 26742223 9
Deletion Chr5 27507579 27507583 4
Deletion Chr11 28888211 28888220 9
Deletion Chr3 31627874 31627880 6
Deletion Chr2 32628651 32628652 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 781992 781994 1
Insertion Chr7 28030703 28030707 3
Insertion Chr8 12921786 12921788 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6341706 6460056
Inversion Chr7 6341724 6468267
Inversion Chr12 17055243 17103865
Inversion Chr12 17055251 17107083
Inversion Chr12 18747821 18876388 OsKitaake12g138500
Inversion Chr12 18837355 18874612

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 2743318 Chr4 13262890 OsKitaake06g037300
Translocation Chr7 7856327 Chr4 16592253 OsKitaake07g086400
Translocation Chr7 7857714 Chr2 29886898
Translocation Chr4 16591313 Chr2 29886884
Translocation Chr12 19082718 Chr4 641101
Translocation Chr12 19082858 Chr4 640660

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6098226	C-T	Homo	INTERGENIC
SBS	Chr1	10012724	T-A	Hetero	INTERGENIC
SBS	Chr1	10524532	A-G	Hetero	INTERGENIC
SBS	Chr1	19946518	G-A	Hetero	INTERGENIC
SBS	Chr1	20052059	G-A	Hetero	INTERGENIC
SBS	Chr2	1083819	G-A	Hetero	INTERGENIC
SBS	Chr2	5931868	A-T	Hetero	INTERGENIC
SBS	Chr2	16976151	G-C	Hetero	INTERGENIC
SBS	Chr3	11249214	A-T	Hetero	INTERGENIC
SBS	Chr3	23503144	C-T	Hetero	INTERGENIC
SBS	Chr3	33785775	A-G	Hetero	INTERGENIC
SBS	Chr4	1899727	G-T	Homo	INTERGENIC
SBS	Chr4	1899728	A-T	Homo	INTERGENIC
SBS	Chr4	4201267	C-T	Homo	INTERGENIC
SBS	Chr4	13970927	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	14982406	T-A	Homo	INTERGENIC
SBS	Chr4	27547971	C-T	Homo	INTERGENIC
SBS	Chr5	3733711	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr5	5390514	A-G	Homo	INTERGENIC
SBS	Chr5	14148844	C-T	Hetero	INTERGENIC
SBS	Chr6	3267695	G-C	Homo	INTRON
SBS	Chr6	4253741	A-T	Homo	INTRON
SBS	Chr6	4253743	C-T	Homo	INTRON
SBS	Chr6	10395226	G-A	Homo	INTERGENIC
SBS	Chr6	14165106	C-T	Homo	INTERGENIC
SBS	Chr6	26832228	G-A	Homo	INTERGENIC
SBS	Chr7	11366703	G-T	Hetero	INTERGENIC
SBS	Chr7	13138727	T-C	Hetero	INTERGENIC
SBS	Chr8	8680955	C-T	Homo	INTERGENIC
SBS	Chr8	12768809	C-A	Hetero	INTERGENIC
SBS	Chr8	12768810	C-A	Hetero	INTERGENIC
SBS	Chr8	18580405	A-G	Hetero	INTERGENIC
SBS	Chr8	25201774	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g196500
SBS	Chr8	29081139	T-C	Homo	INTRON
SBS	Chr9	4783705	A-G	Homo	INTERGENIC
SBS	Chr9	8684049	G-A	Hetero	INTERGENIC
SBS	Chr9	9392287	G-C	Homo	INTERGENIC
SBS	Chr9	22430020	C-A	Homo	INTRON
SBS	Chr10	9413564	C-T	Hetero	INTRON
SBS	Chr10	14858819	T-A	Hetero	INTERGENIC
SBS	Chr10	22971376	G-A	Hetero	INTERGENIC
SBS	Chr11	9631296	G-A	Hetero	INTERGENIC
SBS	Chr11	11826067	C-T	Hetero	INTERGENIC
SBS	Chr11	28728852	T-A	Hetero	INTERGENIC
SBS	Chr12	6760736	A-T	Hetero	INTERGENIC
SBS	Chr12	7689462	G-T	Hetero	INTERGENIC
SBS	Chr12	8569215	A-C	Hetero	INTERGENIC
SBS	Chr12	22945580	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3530766	3530767	1
Deletion	Chr7	5564949	5564951	2
Deletion	Chr9	5620089	5620093	4
Deletion	Chr10	6746436	6746438	2
Deletion	Chr12	8555047	8555050	3
Deletion	Chr9	9840213	9840214	1
Deletion	Chr10	10320406	10320410	4
Deletion	Chr5	13967175	13967176	1
Deletion	Chr7	18531580	18531587	7
Deletion	Chr12	18748001	18837000	88999	3
Deletion	Chr10	22012416	22012418	2
Deletion	Chr8	23715293	23715295	2
Deletion	Chr1	26742214	26742223	9
Deletion	Chr5	27507579	27507583	4
Deletion	Chr11	28888211	28888220	9
Deletion	Chr3	31627874	31627880	6
Deletion	Chr2	32628651	32628652	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6341706	6460056
Inversion	Chr7	6341724	6468267
Inversion	Chr12	17055243	17103865
Inversion	Chr12	17055251	17107083
Inversion	Chr12	18747821	18876388	OsKitaake12g138500
Inversion	Chr12	18837355	18874612

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes