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| Mutant Information |
|---|
| Mutant Name | FN-286 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-286 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18955812 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 8976088 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12714706 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 14844904 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 23785766 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24698733 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 10244192 | T-C | Homo | INTRON | |
| SBS | Chr3 | 25639858 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 3454173 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18798169 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 35688268 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g304800 |
| SBS | Chr6 | 774835 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 2687286 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 2687291 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 2687346 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18776249 | C-T | Homo | INTRON | |
| SBS | Chr7 | 7124394 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 7124395 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 7381815 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 12388476 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 770496 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 1940693 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 5014555 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8974114 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18018909 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 9820297 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 15938435 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 20213109 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 20213110 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5488218 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13451988 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 3830682 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10246735 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20340088 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 6618309 | A-C | Hetero | INTRON | |
| SBS | Chr12 | 7945143 | T-C | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 1105083 | 1105086 | 3 | OsKitaake05g013900 |
| Deletion | Chr6 | 1565001 | 1628000 | 62999 | 13 |
| Deletion | Chr9 | 2746399 | 2746719 | 320 | |
| Deletion | Chr3 | 4044572 | 4044584 | 12 | OsKitaake03g057600 |
| Deletion | Chr6 | 10560837 | 10560841 | 4 | |
| Deletion | Chr5 | 15891001 | 15987000 | 95999 | 8 |
| Deletion | Chr1 | 17357071 | 17357081 | 10 | |
| Deletion | Chr4 | 18255709 | 18255719 | 10 | |
| Deletion | Chr12 | 20236001 | 20285000 | 48999 | 5 |
| Deletion | Chr4 | 21685993 | 21685999 | 6 | |
| Deletion | Chr6 | 23174545 | 23174546 | 1 | |
| Deletion | Chr1 | 25885449 | 25885469 | 20 | OsKitaake01g251700 |
| Deletion | Chr11 | 26302359 | 26302360 | 1 | OsKitaake11g212900 |
| Deletion | Chr4 | 28379391 | 28379395 | 4 | |
| Deletion | Chr4 | 29371875 | 29371876 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 3136342 | 3136345 | 2 | |
| Insertion | Chr2 | 13817575 | 13817577 | 1 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 6302787 | Chr4 | 2760155 | |
| Translocation | Chr8 | 11306045 | Chr2 | 12946566 | |
| Translocation | Chr8 | 11306047 | Chr2 | 12946110 | |
| Translocation | Chr5 | 28570578 | Chr4 | 32596126 | OsKitaake04g261500 |
| Translocation | Chr5 | 28570581 | Chr4 | 32596306 | OsKitaake04g261500 |