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Mutant Information

Mutant Name	FN-287 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-287 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2358881 G-T Hetero INTERGENIC
SBS Chr1 43266897 C-T Hetero SPLICE_SITE_REGION
SBS Chr2 19244948 T-C Hetero UTR_5_PRIME
SBS Chr2 27371084 C-G Hetero INTERGENIC
SBS Chr2 27371087 C-T Hetero INTERGENIC
SBS Chr4 3154657 T-C Hetero INTERGENIC
SBS Chr4 4698125 G-A Hetero INTERGENIC
SBS Chr4 11500087 T-C Hetero INTERGENIC
SBS Chr4 21313878 T-C Hetero INTERGENIC
SBS Chr4 21922123 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g127000
SBS Chr4 36461068 A-G Hetero SPLICE_SITE_REGION
SBS Chr5 10698985 C-T Hetero INTERGENIC
SBS Chr5 11762623 T-G Hetero INTERGENIC
SBS Chr6 26439091 C-T Hetero STOP_GAINED OsKitaake06g237500
SBS Chr6 31033295 C-A Hetero INTERGENIC
SBS Chr7 9435850 C-T Hetero INTERGENIC
SBS Chr7 15211480 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g127300
SBS Chr7 25404269 C-T Homo SYNONYMOUS_CODING
SBS Chr8 7408133 G-T Hetero INTERGENIC
SBS Chr8 9806668 C-T Hetero INTERGENIC
SBS Chr8 20600655 T-A Homo INTERGENIC
SBS Chr9 8190470 G-T Hetero INTERGENIC
SBS Chr9 9692588 A-C Hetero INTRON
SBS Chr9 13780226 T-C Hetero INTERGENIC
SBS Chr10 3390214 C-G Homo INTERGENIC
SBS Chr10 7839367 G-A Hetero INTERGENIC
SBS Chr10 23590026 T-A Hetero INTERGENIC
SBS Chr12 14005099 G-C Hetero INTERGENIC
SBS Chr12 21235743 C-T Hetero INTERGENIC
SBS Chr12 26950805 A-T Hetero SYNONYMOUS_CODING

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 5896560 5896564 4
Deletion Chr11 7731285 7731287 2
Deletion Chr10 8723334 8723335 1
Deletion Chr3 9296152 9296176 24
Deletion Chr7 9361707 9361714 7
Deletion Chr9 10022150 10022159 9
Deletion Chr1 11077323 11077328 5
Deletion Chr3 11871001 11910000 38999 4
Deletion Chr8 12022434 12022440 6
Deletion Chr8 12208690 12208720 30
Deletion Chr11 12439452 12439457 5
Deletion Chr5 12995526 12995528 2 OsKitaake05g101000
Deletion Chr7 13726001 13730000 3999
Deletion Chr7 14418725 14418743 18
Deletion Chr2 17007323 17007327 4
Deletion Chr10 18200783 18200789 6
Deletion Chr5 21023924 21023930 6
Deletion Chr10 21044342 21044346 4
Deletion Chr5 22440514 22440518 4
Deletion Chr12 23398369 23398380 11
Deletion Chr6 24756748 24756752 4
Deletion Chr1 25294666 25294677 11
Deletion Chr5 26620058 26620072 14
Deletion Chr11 26754165 26754184 19
Deletion Chr6 27931639 27931644 5
Deletion Chr1 42103857 42103870 13

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 577978 577981 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11707893 11872249 OsKitaake03g161700
Inversion Chr3 11925063 12193696 OsKitaake03g164900

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 9096506 Chr6 24729690 OsKitaake08g083000
Translocation Chr8 9121509 Chr6 24729513 OsKitaake08g083101
Translocation Chr7 26222369 Chr6 5481413 OsKitaake07g240800
Translocation Chr7 26222927 Chr6 5209407 OsKitaake07g240800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2358881	G-T	Hetero	INTERGENIC
SBS	Chr1	43266897	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr2	19244948	T-C	Hetero	UTR_5_PRIME
SBS	Chr2	27371084	C-G	Hetero	INTERGENIC
SBS	Chr2	27371087	C-T	Hetero	INTERGENIC
SBS	Chr4	3154657	T-C	Hetero	INTERGENIC
SBS	Chr4	4698125	G-A	Hetero	INTERGENIC
SBS	Chr4	11500087	T-C	Hetero	INTERGENIC
SBS	Chr4	21313878	T-C	Hetero	INTERGENIC
SBS	Chr4	21922123	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g127000
SBS	Chr4	36461068	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr5	10698985	C-T	Hetero	INTERGENIC
SBS	Chr5	11762623	T-G	Hetero	INTERGENIC
SBS	Chr6	26439091	C-T	Hetero	STOP_GAINED	OsKitaake06g237500
SBS	Chr6	31033295	C-A	Hetero	INTERGENIC
SBS	Chr7	9435850	C-T	Hetero	INTERGENIC
SBS	Chr7	15211480	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g127300
SBS	Chr7	25404269	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	7408133	G-T	Hetero	INTERGENIC
SBS	Chr8	9806668	C-T	Hetero	INTERGENIC
SBS	Chr8	20600655	T-A	Homo	INTERGENIC
SBS	Chr9	8190470	G-T	Hetero	INTERGENIC
SBS	Chr9	9692588	A-C	Hetero	INTRON
SBS	Chr9	13780226	T-C	Hetero	INTERGENIC
SBS	Chr10	3390214	C-G	Homo	INTERGENIC
SBS	Chr10	7839367	G-A	Hetero	INTERGENIC
SBS	Chr10	23590026	T-A	Hetero	INTERGENIC
SBS	Chr12	14005099	G-C	Hetero	INTERGENIC
SBS	Chr12	21235743	C-T	Hetero	INTERGENIC
SBS	Chr12	26950805	A-T	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	5896560	5896564	4
Deletion	Chr11	7731285	7731287	2
Deletion	Chr10	8723334	8723335	1
Deletion	Chr3	9296152	9296176	24
Deletion	Chr7	9361707	9361714	7
Deletion	Chr9	10022150	10022159	9
Deletion	Chr1	11077323	11077328	5
Deletion	Chr3	11871001	11910000	38999	4
Deletion	Chr8	12022434	12022440	6
Deletion	Chr8	12208690	12208720	30
Deletion	Chr11	12439452	12439457	5
Deletion	Chr5	12995526	12995528	2	OsKitaake05g101000
Deletion	Chr7	13726001	13730000	3999
Deletion	Chr7	14418725	14418743	18
Deletion	Chr2	17007323	17007327	4
Deletion	Chr10	18200783	18200789	6
Deletion	Chr5	21023924	21023930	6
Deletion	Chr10	21044342	21044346	4
Deletion	Chr5	22440514	22440518	4
Deletion	Chr12	23398369	23398380	11
Deletion	Chr6	24756748	24756752	4
Deletion	Chr1	25294666	25294677	11
Deletion	Chr5	26620058	26620072	14
Deletion	Chr11	26754165	26754184	19
Deletion	Chr6	27931639	27931644	5
Deletion	Chr1	42103857	42103870	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11707893	11872249	OsKitaake03g161700
Inversion	Chr3	11925063	12193696	OsKitaake03g164900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes