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Mutant Information

Mutant Name	FN-288 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-288 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22238471 C-G Homo INTRON
SBS Chr2 211904 A-T Hetero INTRON
SBS Chr2 2846156 C-T Hetero INTERGENIC
SBS Chr2 18026244 C-T Homo INTERGENIC
SBS Chr2 18026245 C-T Homo INTERGENIC
SBS Chr2 18026257 G-C Homo INTERGENIC
SBS Chr2 22305767 T-A Hetero INTERGENIC
SBS Chr3 32245577 C-A Hetero INTERGENIC
SBS Chr4 8110970 C-A Hetero INTERGENIC
SBS Chr4 17575626 C-A Hetero INTERGENIC
SBS Chr4 23432507 A-T Homo INTERGENIC
SBS Chr4 29038454 A-T Homo INTERGENIC
SBS Chr5 2532577 T-C Hetero INTERGENIC
SBS Chr6 11449320 A-T Homo INTERGENIC
SBS Chr6 28066952 A-T Hetero INTERGENIC
SBS Chr7 9263403 C-T Homo INTERGENIC
SBS Chr7 11322158 T-A Hetero INTERGENIC
SBS Chr8 3676797 A-T Hetero INTERGENIC
SBS Chr8 4499751 T-C Hetero INTRON
SBS Chr8 5112702 A-G Hetero INTERGENIC
SBS Chr8 21211237 G-T Hetero INTERGENIC
SBS Chr8 24241225 C-T Homo INTERGENIC
SBS Chr8 27243401 C-T Hetero INTERGENIC
SBS Chr9 11305226 C-G Homo INTERGENIC
SBS Chr10 1563980 G-A Hetero INTERGENIC
SBS Chr10 2033325 A-T Hetero INTERGENIC
SBS Chr10 6320056 G-A Hetero INTERGENIC
SBS Chr10 6774860 A-T Hetero INTERGENIC
SBS Chr10 6774861 A-T Hetero INTERGENIC
SBS Chr10 6774863 C-T Hetero INTERGENIC
SBS Chr10 15585513 C-T Hetero INTERGENIC
SBS Chr11 1361462 A-C Hetero UTR_3_PRIME
SBS Chr11 16262536 T-A Hetero INTERGENIC
SBS Chr11 21563205 C-T Hetero INTERGENIC
SBS Chr12 2687006 C-T Hetero INTRON
SBS Chr12 3643689 T-A Hetero UTR_3_PRIME
SBS Chr12 8515583 A-C Hetero INTERGENIC
SBS Chr12 10926012 G-A Hetero INTERGENIC
SBS Chr12 18725378 T-G Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 527554 527556 2
Deletion Chr10 1501523 1501531 8
Deletion Chr7 2763171 2763173 2
Deletion Chr1 3673001 3684000 10999 OsKitaake01g049200
Deletion Chr6 4118001 4141000 22999 OsKitaake06g057700
Deletion Chr5 4612001 4790000 177999 6
Deletion Chr8 7477955 7477959 4
Deletion Chr6 7510698 7510701 3
Deletion Chr4 14022663 14022665 2
Deletion Chr6 14024558 14024559 1
Deletion Chr5 15174109 15174120 11
Deletion Chr5 16031160 16031185 25
Deletion Chr9 16348602 16348611 9
Deletion Chr1 17845669 17845670 1
Deletion Chr10 18247812 18247814 2
Deletion Chr7 18906381 18906383 2
Deletion Chr8 23533001 23550000 16999
Deletion Chr6 25929117 25929120 3
Deletion Chr2 28225846 28225848 2 OsKitaake02g284600
Deletion Chr2 28413927 28413934 7
Deletion Chr1 28690410 28690414 4
Deletion Chr2 30524847 30524850 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38734287 38734293 5
Insertion Chr1 39475423 39475428 4
Insertion Chr11 21352746 21352749 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 22119546 22298092 OsKitaake02g215800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 25406152 Chr1 1303798 OsKitaake12g208400
Translocation Chr12 25406198 Chr1 1315580

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22238471	C-G	Homo	INTRON
SBS	Chr2	211904	A-T	Hetero	INTRON
SBS	Chr2	2846156	C-T	Hetero	INTERGENIC
SBS	Chr2	18026244	C-T	Homo	INTERGENIC
SBS	Chr2	18026245	C-T	Homo	INTERGENIC
SBS	Chr2	18026257	G-C	Homo	INTERGENIC
SBS	Chr2	22305767	T-A	Hetero	INTERGENIC
SBS	Chr3	32245577	C-A	Hetero	INTERGENIC
SBS	Chr4	8110970	C-A	Hetero	INTERGENIC
SBS	Chr4	17575626	C-A	Hetero	INTERGENIC
SBS	Chr4	23432507	A-T	Homo	INTERGENIC
SBS	Chr4	29038454	A-T	Homo	INTERGENIC
SBS	Chr5	2532577	T-C	Hetero	INTERGENIC
SBS	Chr6	11449320	A-T	Homo	INTERGENIC
SBS	Chr6	28066952	A-T	Hetero	INTERGENIC
SBS	Chr7	9263403	C-T	Homo	INTERGENIC
SBS	Chr7	11322158	T-A	Hetero	INTERGENIC
SBS	Chr8	3676797	A-T	Hetero	INTERGENIC
SBS	Chr8	4499751	T-C	Hetero	INTRON
SBS	Chr8	5112702	A-G	Hetero	INTERGENIC
SBS	Chr8	21211237	G-T	Hetero	INTERGENIC
SBS	Chr8	24241225	C-T	Homo	INTERGENIC
SBS	Chr8	27243401	C-T	Hetero	INTERGENIC
SBS	Chr9	11305226	C-G	Homo	INTERGENIC
SBS	Chr10	1563980	G-A	Hetero	INTERGENIC
SBS	Chr10	2033325	A-T	Hetero	INTERGENIC
SBS	Chr10	6320056	G-A	Hetero	INTERGENIC
SBS	Chr10	6774860	A-T	Hetero	INTERGENIC
SBS	Chr10	6774861	A-T	Hetero	INTERGENIC
SBS	Chr10	6774863	C-T	Hetero	INTERGENIC
SBS	Chr10	15585513	C-T	Hetero	INTERGENIC
SBS	Chr11	1361462	A-C	Hetero	UTR_3_PRIME
SBS	Chr11	16262536	T-A	Hetero	INTERGENIC
SBS	Chr11	21563205	C-T	Hetero	INTERGENIC
SBS	Chr12	2687006	C-T	Hetero	INTRON
SBS	Chr12	3643689	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	8515583	A-C	Hetero	INTERGENIC
SBS	Chr12	10926012	G-A	Hetero	INTERGENIC
SBS	Chr12	18725378	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	527554	527556	2
Deletion	Chr10	1501523	1501531	8
Deletion	Chr7	2763171	2763173	2
Deletion	Chr1	3673001	3684000	10999	OsKitaake01g049200
Deletion	Chr6	4118001	4141000	22999	OsKitaake06g057700
Deletion	Chr5	4612001	4790000	177999	6
Deletion	Chr8	7477955	7477959	4
Deletion	Chr6	7510698	7510701	3
Deletion	Chr4	14022663	14022665	2
Deletion	Chr6	14024558	14024559	1
Deletion	Chr5	15174109	15174120	11
Deletion	Chr5	16031160	16031185	25
Deletion	Chr9	16348602	16348611	9
Deletion	Chr1	17845669	17845670	1
Deletion	Chr10	18247812	18247814	2
Deletion	Chr7	18906381	18906383	2
Deletion	Chr8	23533001	23550000	16999
Deletion	Chr6	25929117	25929120	3
Deletion	Chr2	28225846	28225848	2	OsKitaake02g284600
Deletion	Chr2	28413927	28413934	7
Deletion	Chr1	28690410	28690414	4
Deletion	Chr2	30524847	30524850	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	22119546	22298092	OsKitaake02g215800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes