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Mutant Information

Mutant Name	FN-29 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-29 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10067178 C-T Homo INTERGENIC
SBS Chr1 22784342 A-T Homo INTERGENIC
SBS Chr2 3265029 C-T Hetero INTERGENIC
SBS Chr2 35683408 C-A Homo INTERGENIC
SBS Chr3 8562913 T-A Hetero INTRON
SBS Chr3 9479004 G-A Hetero INTERGENIC
SBS Chr3 19974900 T-A Hetero SYNONYMOUS_CODING
SBS Chr5 5604610 G-A Hetero INTERGENIC
SBS Chr6 1993572 A-G Hetero INTERGENIC
SBS Chr6 7968968 C-T Hetero INTRON
SBS Chr6 8269586 C-G Hetero INTERGENIC
SBS Chr6 8884275 C-T Hetero INTERGENIC
SBS Chr6 13617356 G-A Hetero INTERGENIC
SBS Chr6 19983002 C-A Hetero INTERGENIC
SBS Chr6 20119066 G-A Hetero INTERGENIC
SBS Chr6 21235575 C-T Hetero INTRON
SBS Chr6 28946015 A-C Homo INTERGENIC
SBS Chr7 4153106 G-A Hetero INTRON
SBS Chr8 160131 C-T Hetero INTERGENIC
SBS Chr8 186929 T-A Hetero INTRON
SBS Chr8 22881505 C-G Homo INTERGENIC
SBS Chr9 7549744 G-T Hetero INTERGENIC
SBS Chr9 17146655 T-A Hetero INTRON
SBS Chr9 21031494 T-A Hetero INTRON
SBS Chr10 1111422 C-T Hetero INTERGENIC
SBS Chr10 13303781 T-G Hetero INTERGENIC
SBS Chr11 13621691 C-T Hetero INTERGENIC
SBS Chr12 14264352 T-C Hetero INTERGENIC
SBS Chr12 14512690 G-A Hetero INTRON
SBS Chr12 22566628 G-A Hetero INTERGENIC
SBS Chr12 26815293 A-G Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4561879 4561880 1
Deletion Chr9 7641682 7641683 1
Deletion Chr6 10103979 10103980 1
Deletion Chr8 11587067 11587069 2
Deletion Chr4 17115001 17225000 109999 9
Deletion Chr5 18239387 18239395 8
Deletion Chr5 19123329 19123331 2
Deletion Chr3 20029141 20029296 155
Deletion Chr6 30773625 30773627 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr4 4457804 4457806 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16923049 16981717
Inversion Chr7 17556834 17628779 OsKitaake07g143100
Inversion Chr7 17556838 17628795 OsKitaake07g143100
Inversion Chr2 17883829 18167821
Inversion Chr2 17883911 18167826
Inversion Chr12 23018480 23043800 2
Inversion Chr12 23018486 23043807 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 8882690 Chr2 601324 OsKitaake02g009000
Translocation Chr8 8882709 Chr2 600437 OsKitaake02g009000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10067178	C-T	Homo	INTERGENIC
SBS	Chr1	22784342	A-T	Homo	INTERGENIC
SBS	Chr2	3265029	C-T	Hetero	INTERGENIC
SBS	Chr2	35683408	C-A	Homo	INTERGENIC
SBS	Chr3	8562913	T-A	Hetero	INTRON
SBS	Chr3	9479004	G-A	Hetero	INTERGENIC
SBS	Chr3	19974900	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	5604610	G-A	Hetero	INTERGENIC
SBS	Chr6	1993572	A-G	Hetero	INTERGENIC
SBS	Chr6	7968968	C-T	Hetero	INTRON
SBS	Chr6	8269586	C-G	Hetero	INTERGENIC
SBS	Chr6	8884275	C-T	Hetero	INTERGENIC
SBS	Chr6	13617356	G-A	Hetero	INTERGENIC
SBS	Chr6	19983002	C-A	Hetero	INTERGENIC
SBS	Chr6	20119066	G-A	Hetero	INTERGENIC
SBS	Chr6	21235575	C-T	Hetero	INTRON
SBS	Chr6	28946015	A-C	Homo	INTERGENIC
SBS	Chr7	4153106	G-A	Hetero	INTRON
SBS	Chr8	160131	C-T	Hetero	INTERGENIC
SBS	Chr8	186929	T-A	Hetero	INTRON
SBS	Chr8	22881505	C-G	Homo	INTERGENIC
SBS	Chr9	7549744	G-T	Hetero	INTERGENIC
SBS	Chr9	17146655	T-A	Hetero	INTRON
SBS	Chr9	21031494	T-A	Hetero	INTRON
SBS	Chr10	1111422	C-T	Hetero	INTERGENIC
SBS	Chr10	13303781	T-G	Hetero	INTERGENIC
SBS	Chr11	13621691	C-T	Hetero	INTERGENIC
SBS	Chr12	14264352	T-C	Hetero	INTERGENIC
SBS	Chr12	14512690	G-A	Hetero	INTRON
SBS	Chr12	22566628	G-A	Hetero	INTERGENIC
SBS	Chr12	26815293	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4561879	4561880	1
Deletion	Chr9	7641682	7641683	1
Deletion	Chr6	10103979	10103980	1
Deletion	Chr8	11587067	11587069	2
Deletion	Chr4	17115001	17225000	109999	9
Deletion	Chr5	18239387	18239395	8
Deletion	Chr5	19123329	19123331	2
Deletion	Chr3	20029141	20029296	155
Deletion	Chr6	30773625	30773627	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16923049	16981717
Inversion	Chr7	17556834	17628779	OsKitaake07g143100
Inversion	Chr7	17556838	17628795	OsKitaake07g143100
Inversion	Chr2	17883829	18167821
Inversion	Chr2	17883911	18167826
Inversion	Chr12	23018480	23043800	2
Inversion	Chr12	23018486	23043807	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes