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| Mutant Information |
|---|
| Mutant Name | FN-290 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-290 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11409029 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 14893471 | C-A | Hetero | INTRON | |
| SBS | Chr1 | 37929894 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 39240218 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 4885435 | C-G | Homo | INTRON | |
| SBS | Chr2 | 10646196 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 27986812 | T-A | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 29648429 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 33200159 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 35775977 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 5402841 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 6750742 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 17141481 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23204577 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 9595814 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16230338 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 304027 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g004200 |
| SBS | Chr5 | 16816651 | T-A | Homo | INTRON | |
| SBS | Chr7 | 2563953 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6421548 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 8622422 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 9672110 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13792222 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12505616 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15539962 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25949319 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24246177 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 25317736 | G-C | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 611225 | 611231 | 6 | |
| Deletion | Chr5 | 1423461 | 1423462 | 1 | |
| Deletion | Chr9 | 2699117 | 2699118 | 1 | |
| Deletion | Chr6 | 3013559 | 3013561 | 2 | OsKitaake06g041500 |
| Deletion | Chr5 | 3986432 | 3986435 | 3 | |
| Deletion | Chr11 | 5668041 | 5668043 | 2 | OsKitaake11g069400 |
| Deletion | Chr1 | 7166930 | 7166934 | 4 | |
| Deletion | Chr12 | 17564382 | 17564383 | 1 | |
| Deletion | Chr7 | 23782755 | 23782764 | 9 | |
| Deletion | Chr7 | 26968024 | 26968026 | 2 | |
| Deletion | Chr2 | 30864508 | 30864511 | 3 | |
| Deletion | Chr2 | 32437881 | 32437883 | 2 | |
| Deletion | Chr3 | 32990001 | 33006000 | 15999 | 4 |
| Deletion | Chr3 | 33344322 | 33344324 | 2 | |
| Deletion | Chr1 | 43097001 | 43322000 | 224999 | 31 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 38689187 | 38689190 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 42921749 | 43094408 | 2 |
| Inversion | Chr1 | 42921794 | 43318906 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 11584636 | Chr7 | 14823515 | OsKitaake10g069000 |
| Translocation | Chr10 | 11665871 | Chr7 | 12213372 |