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Mutant Information

Mutant Name	FN-291 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-291 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13199511 G-A Hetero INTERGENIC
SBS Chr1 20730150 C-T Hetero INTERGENIC
SBS Chr1 21012646 C-T Hetero INTERGENIC
SBS Chr1 21850016 C-T Hetero INTRON
SBS Chr1 31576165 G-C Homo INTRON
SBS Chr1 36645795 G-C Homo UTR_3_PRIME
SBS Chr2 11557020 G-A Hetero INTERGENIC
SBS Chr2 13756127 G-T Hetero INTERGENIC
SBS Chr2 16776826 C-T Hetero INTERGENIC
SBS Chr3 13216490 A-G Homo INTRON
SBS Chr3 17686540 G-A Hetero INTERGENIC
SBS Chr3 26265770 C-A Homo INTERGENIC
SBS Chr3 32303234 G-A Homo INTERGENIC
SBS Chr3 37439312 C-T Hetero INTERGENIC
SBS Chr4 8855636 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g045700
SBS Chr4 15003023 G-A Homo INTERGENIC
SBS Chr4 18031625 C-A Hetero INTERGENIC
SBS Chr4 36417474 A-G Homo INTERGENIC
SBS Chr5 11945332 T-A Hetero INTERGENIC
SBS Chr5 19611201 A-G Hetero INTERGENIC
SBS Chr6 1466007 A-G Hetero INTERGENIC
SBS Chr6 6475308 C-T Hetero INTERGENIC
SBS Chr6 21753530 G-A Hetero INTERGENIC
SBS Chr7 12123613 C-T Hetero INTERGENIC
SBS Chr7 13074660 T-C Hetero INTERGENIC
SBS Chr7 14503939 T-C Hetero INTERGENIC
SBS Chr8 942918 G-A Hetero INTERGENIC
SBS Chr8 12557552 G-T Hetero INTERGENIC
SBS Chr8 12557553 C-G Hetero INTERGENIC
SBS Chr8 14838648 T-C Hetero SYNONYMOUS_CODING
SBS Chr9 9945293 T-A Hetero INTERGENIC
SBS Chr9 9945294 C-A Hetero INTERGENIC
SBS Chr9 11532441 T-G Hetero INTERGENIC
SBS Chr9 14591297 G-T Hetero INTRON
SBS Chr9 14667144 G-A Hetero INTERGENIC
SBS Chr10 248558 G-A Hetero INTERGENIC
SBS Chr10 9001628 A-T Homo INTERGENIC
SBS Chr10 12174082 C-T Homo INTERGENIC
SBS Chr11 10650080 T-C Hetero INTRON
SBS Chr12 14641488 G-A Homo INTERGENIC
SBS Chr12 21890921 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2152363 2152364 1
Deletion Chr2 2402416 2402417 1
Deletion Chr9 5669220 5669226 6
Deletion Chr3 6779438 6779440 2
Deletion Chr2 8215204 8215209 5
Deletion Chr10 8670277 8670443 166
Deletion Chr10 9312445 9312446 1
Deletion Chr4 9769179 9769180 1
Deletion Chr4 11185801 11185802 1
Deletion Chr1 20751001 20764000 12999
Deletion Chr1 20780001 20822000 41999 3
Deletion Chr1 22740001 22872000 131999 OsKitaake01g217600
Deletion Chr3 36614366 36614368 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 28812558 28812562 3
Insertion Chr1 12807083 12807086 2
Insertion Chr6 16020336 16020338 1 OsKitaake06g154000
Insertion Chr12 11659468 11659470 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 22870598 23847131
Inversion Chr6 25661342 25836175
Inversion Chr6 25661380 25836209

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13199511	G-A	Hetero	INTERGENIC
SBS	Chr1	20730150	C-T	Hetero	INTERGENIC
SBS	Chr1	21012646	C-T	Hetero	INTERGENIC
SBS	Chr1	21850016	C-T	Hetero	INTRON
SBS	Chr1	31576165	G-C	Homo	INTRON
SBS	Chr1	36645795	G-C	Homo	UTR_3_PRIME
SBS	Chr2	11557020	G-A	Hetero	INTERGENIC
SBS	Chr2	13756127	G-T	Hetero	INTERGENIC
SBS	Chr2	16776826	C-T	Hetero	INTERGENIC
SBS	Chr3	13216490	A-G	Homo	INTRON
SBS	Chr3	17686540	G-A	Hetero	INTERGENIC
SBS	Chr3	26265770	C-A	Homo	INTERGENIC
SBS	Chr3	32303234	G-A	Homo	INTERGENIC
SBS	Chr3	37439312	C-T	Hetero	INTERGENIC
SBS	Chr4	8855636	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g045700
SBS	Chr4	15003023	G-A	Homo	INTERGENIC
SBS	Chr4	18031625	C-A	Hetero	INTERGENIC
SBS	Chr4	36417474	A-G	Homo	INTERGENIC
SBS	Chr5	11945332	T-A	Hetero	INTERGENIC
SBS	Chr5	19611201	A-G	Hetero	INTERGENIC
SBS	Chr6	1466007	A-G	Hetero	INTERGENIC
SBS	Chr6	6475308	C-T	Hetero	INTERGENIC
SBS	Chr6	21753530	G-A	Hetero	INTERGENIC
SBS	Chr7	12123613	C-T	Hetero	INTERGENIC
SBS	Chr7	13074660	T-C	Hetero	INTERGENIC
SBS	Chr7	14503939	T-C	Hetero	INTERGENIC
SBS	Chr8	942918	G-A	Hetero	INTERGENIC
SBS	Chr8	12557552	G-T	Hetero	INTERGENIC
SBS	Chr8	12557553	C-G	Hetero	INTERGENIC
SBS	Chr8	14838648	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	9945293	T-A	Hetero	INTERGENIC
SBS	Chr9	9945294	C-A	Hetero	INTERGENIC
SBS	Chr9	11532441	T-G	Hetero	INTERGENIC
SBS	Chr9	14591297	G-T	Hetero	INTRON
SBS	Chr9	14667144	G-A	Hetero	INTERGENIC
SBS	Chr10	248558	G-A	Hetero	INTERGENIC
SBS	Chr10	9001628	A-T	Homo	INTERGENIC
SBS	Chr10	12174082	C-T	Homo	INTERGENIC
SBS	Chr11	10650080	T-C	Hetero	INTRON
SBS	Chr12	14641488	G-A	Homo	INTERGENIC
SBS	Chr12	21890921	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2152363	2152364	1
Deletion	Chr2	2402416	2402417	1
Deletion	Chr9	5669220	5669226	6
Deletion	Chr3	6779438	6779440	2
Deletion	Chr2	8215204	8215209	5
Deletion	Chr10	8670277	8670443	166
Deletion	Chr10	9312445	9312446	1
Deletion	Chr4	9769179	9769180	1
Deletion	Chr4	11185801	11185802	1
Deletion	Chr1	20751001	20764000	12999
Deletion	Chr1	20780001	20822000	41999	3
Deletion	Chr1	22740001	22872000	131999	OsKitaake01g217600
Deletion	Chr3	36614366	36614368	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	22870598	23847131
Inversion	Chr6	25661342	25836175
Inversion	Chr6	25661380	25836209

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes