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Mutant Information

Mutant Name	FN-292 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-292 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 14949225 C-T Hetero INTERGENIC
SBS Chr2 21151139 C-G Hetero UTR_5_PRIME
SBS Chr3 372227 T-C Homo UTR_3_PRIME
SBS Chr3 372231 T-A Homo UTR_3_PRIME
SBS Chr3 24737387 A-G Hetero INTRON
SBS Chr3 34429636 C-A Homo INTERGENIC
SBS Chr4 583214 C-T Hetero INTERGENIC
SBS Chr4 20396673 A-C Hetero INTERGENIC
SBS Chr5 6849696 T-A Hetero INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr6 30881558 A-G Homo INTRON
SBS Chr7 13821548 G-A Hetero INTERGENIC
SBS Chr7 17783412 G-A Hetero INTERGENIC
SBS Chr7 18206929 C-T Hetero INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr7 21778646 G-A Homo INTERGENIC
SBS Chr8 1327848 A-C Hetero INTERGENIC
SBS Chr8 12020884 C-T Homo INTERGENIC
SBS Chr9 284464 A-G Hetero INTERGENIC
SBS Chr9 284466 G-T Hetero INTERGENIC
SBS Chr9 1633511 G-C Hetero INTERGENIC
SBS Chr9 1633522 T-A Hetero INTERGENIC
SBS Chr9 6638332 T-C Hetero INTERGENIC
SBS Chr10 4453902 G-A Hetero INTERGENIC
SBS Chr10 6127199 G-A Hetero INTERGENIC
SBS Chr10 13077654 T-C Hetero INTERGENIC
SBS Chr10 23062754 T-A Homo INTERGENIC
SBS Chr11 2500920 A-T Hetero INTERGENIC
SBS Chr11 6318280 A-C Hetero INTERGENIC
SBS Chr12 9379599 G-C Hetero INTRON
SBS Chr12 12837759 T-C Homo INTERGENIC
SBS Chr12 14250144 C-A Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 7281870 7281877 7
Deletion Chr9 21813847 21813851 4
Deletion Chr12 23310547 23310632 85
Deletion Chr2 24167645 24167646 1
Deletion Chr2 29670107 29670110 3
Deletion Chr2 29915322 29915323 1
Deletion Chr1 43985976 43985978 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3924524 3924527 2
Insertion Chr12 6026374 6026377 2
Insertion Chr12 7431112 7431115 2
Insertion Chr4 10335753 10335755 1
Insertion Chr7 11994714 11994716 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 14679825 14760120 OsKitaake12g117300
Inversion Chr3 16278646 16563834 2
Inversion Chr3 16278652 16563847 2
Inversion Chr11 21060381 21334232 2
Inversion Chr11 21060413 21334239 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 13773365 Chr2 8248292 OsKitaake02g105100
Translocation Chr7 13773442 Chr2 8246836 OsKitaake02g105100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	14949225	C-T	Hetero	INTERGENIC
SBS	Chr2	21151139	C-G	Hetero	UTR_5_PRIME
SBS	Chr3	372227	T-C	Homo	UTR_3_PRIME
SBS	Chr3	372231	T-A	Homo	UTR_3_PRIME
SBS	Chr3	24737387	A-G	Hetero	INTRON
SBS	Chr3	34429636	C-A	Homo	INTERGENIC
SBS	Chr4	583214	C-T	Hetero	INTERGENIC
SBS	Chr4	20396673	A-C	Hetero	INTERGENIC
SBS	Chr5	6849696	T-A	Hetero	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr6	30881558	A-G	Homo	INTRON
SBS	Chr7	13821548	G-A	Hetero	INTERGENIC
SBS	Chr7	17783412	G-A	Hetero	INTERGENIC
SBS	Chr7	18206929	C-T	Hetero	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr7	21778646	G-A	Homo	INTERGENIC
SBS	Chr8	1327848	A-C	Hetero	INTERGENIC
SBS	Chr8	12020884	C-T	Homo	INTERGENIC
SBS	Chr9	284464	A-G	Hetero	INTERGENIC
SBS	Chr9	284466	G-T	Hetero	INTERGENIC
SBS	Chr9	1633511	G-C	Hetero	INTERGENIC
SBS	Chr9	1633522	T-A	Hetero	INTERGENIC
SBS	Chr9	6638332	T-C	Hetero	INTERGENIC
SBS	Chr10	4453902	G-A	Hetero	INTERGENIC
SBS	Chr10	6127199	G-A	Hetero	INTERGENIC
SBS	Chr10	13077654	T-C	Hetero	INTERGENIC
SBS	Chr10	23062754	T-A	Homo	INTERGENIC
SBS	Chr11	2500920	A-T	Hetero	INTERGENIC
SBS	Chr11	6318280	A-C	Hetero	INTERGENIC
SBS	Chr12	9379599	G-C	Hetero	INTRON
SBS	Chr12	12837759	T-C	Homo	INTERGENIC
SBS	Chr12	14250144	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	7281870	7281877	7
Deletion	Chr9	21813847	21813851	4
Deletion	Chr12	23310547	23310632	85
Deletion	Chr2	24167645	24167646	1
Deletion	Chr2	29670107	29670110	3
Deletion	Chr2	29915322	29915323	1
Deletion	Chr1	43985976	43985978	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	14679825	14760120	OsKitaake12g117300
Inversion	Chr3	16278646	16563834	2
Inversion	Chr3	16278652	16563847	2
Inversion	Chr11	21060381	21334232	2
Inversion	Chr11	21060413	21334239	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes