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Mutant Information

Mutant Name	FN-293 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-293 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 37293638 G-A Hetero INTERGENIC
SBS Chr1 40857028 T-A Hetero INTERGENIC
SBS Chr2 19621588 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g191801
SBS Chr3 5599874 G-A Hetero INTERGENIC
SBS Chr3 23419250 T-G Homo INTERGENIC
SBS Chr3 31650541 A-C Homo INTRON
SBS Chr4 17524569 A-G Hetero INTERGENIC
SBS Chr4 20009626 C-T Hetero UTR_3_PRIME
SBS Chr4 23077998 G-T Hetero UTR_3_PRIME
SBS Chr4 24602701 A-T Hetero INTERGENIC
SBS Chr5 6492036 T-C Hetero INTERGENIC
SBS Chr6 20557017 T-A Hetero INTERGENIC
SBS Chr6 29623158 A-T Hetero INTRON
SBS Chr7 940955 C-T Hetero INTERGENIC
SBS Chr7 12675103 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 14748444 C-A Hetero INTERGENIC
SBS Chr7 16370675 G-A Hetero INTERGENIC
SBS Chr8 17278354 G-T Hetero INTERGENIC
SBS Chr8 21607926 T-G Hetero INTERGENIC
SBS Chr8 26994443 C-A Hetero INTERGENIC
SBS Chr9 1910306 C-G Hetero INTERGENIC
SBS Chr9 5084984 G-A Homo INTERGENIC
SBS Chr9 8957818 A-G Hetero INTERGENIC
SBS Chr10 6123530 A-G Hetero INTERGENIC
SBS Chr10 14313405 C-A Hetero INTERGENIC
SBS Chr10 17034716 C-T Hetero INTERGENIC
SBS Chr10 18683851 T-C Hetero UTR_3_PRIME
SBS Chr10 18795104 T-A Hetero INTERGENIC
SBS Chr10 18795105 A-T Hetero INTERGENIC
SBS Chr10 19067755 G-A Hetero INTERGENIC
SBS Chr10 20129802 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g152600
SBS Chr11 933606 C-T Hetero INTERGENIC
SBS Chr11 16230898 G-C Homo INTERGENIC
SBS Chr12 14605187 C-T Homo INTERGENIC
SBS Chr12 25676038 C-A Homo INTERGENIC
SBS Chr12 25676039 C-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 756993 756995 2
Deletion Chr10 3048001 3075000 26999 3
Deletion Chr5 6508001 6559000 50999 2
Deletion Chr8 12857001 12901000 43999
Deletion Chr2 15582033 15582034 1
Deletion Chr2 15996897 15997181 284
Deletion Chr2 16283309 16283311 2
Deletion Chr3 16528056 16528058 2
Deletion Chr4 18222001 18286000 63999 4
Deletion Chr2 19980674 19980676 2
Deletion Chr7 23198334 23198424 90
Deletion Chr6 24996336 24996385 49
Deletion Chr2 25563446 25563447 1
Deletion Chr5 25628419 25628536 117
Deletion Chr8 25883556 25883558 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 22250215 22250218 2
Insertion Chr11 16647243 16647246 2
Insertion Chr12 3539878 3539881 2
Insertion Chr3 27045845 27045847 1
Insertion Chr11 18736078 18736082 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 16015101 16058520 OsKitaake09g114600
Inversion Chr9 16015102 16058514 OsKitaake09g114600

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 6510280 Chr3 23059968
Translocation Chr3 23059679 Chr1 43888974

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37293638	G-A	Hetero	INTERGENIC
SBS	Chr1	40857028	T-A	Hetero	INTERGENIC
SBS	Chr2	19621588	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g191801
SBS	Chr3	5599874	G-A	Hetero	INTERGENIC
SBS	Chr3	23419250	T-G	Homo	INTERGENIC
SBS	Chr3	31650541	A-C	Homo	INTRON
SBS	Chr4	17524569	A-G	Hetero	INTERGENIC
SBS	Chr4	20009626	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	23077998	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	24602701	A-T	Hetero	INTERGENIC
SBS	Chr5	6492036	T-C	Hetero	INTERGENIC
SBS	Chr6	20557017	T-A	Hetero	INTERGENIC
SBS	Chr6	29623158	A-T	Hetero	INTRON
SBS	Chr7	940955	C-T	Hetero	INTERGENIC
SBS	Chr7	12675103	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	14748444	C-A	Hetero	INTERGENIC
SBS	Chr7	16370675	G-A	Hetero	INTERGENIC
SBS	Chr8	17278354	G-T	Hetero	INTERGENIC
SBS	Chr8	21607926	T-G	Hetero	INTERGENIC
SBS	Chr8	26994443	C-A	Hetero	INTERGENIC
SBS	Chr9	1910306	C-G	Hetero	INTERGENIC
SBS	Chr9	5084984	G-A	Homo	INTERGENIC
SBS	Chr9	8957818	A-G	Hetero	INTERGENIC
SBS	Chr10	6123530	A-G	Hetero	INTERGENIC
SBS	Chr10	14313405	C-A	Hetero	INTERGENIC
SBS	Chr10	17034716	C-T	Hetero	INTERGENIC
SBS	Chr10	18683851	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	18795104	T-A	Hetero	INTERGENIC
SBS	Chr10	18795105	A-T	Hetero	INTERGENIC
SBS	Chr10	19067755	G-A	Hetero	INTERGENIC
SBS	Chr10	20129802	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g152600
SBS	Chr11	933606	C-T	Hetero	INTERGENIC
SBS	Chr11	16230898	G-C	Homo	INTERGENIC
SBS	Chr12	14605187	C-T	Homo	INTERGENIC
SBS	Chr12	25676038	C-A	Homo	INTERGENIC
SBS	Chr12	25676039	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	756993	756995	2
Deletion	Chr10	3048001	3075000	26999	3
Deletion	Chr5	6508001	6559000	50999	2
Deletion	Chr8	12857001	12901000	43999
Deletion	Chr2	15582033	15582034	1
Deletion	Chr2	15996897	15997181	284
Deletion	Chr2	16283309	16283311	2
Deletion	Chr3	16528056	16528058	2
Deletion	Chr4	18222001	18286000	63999	4
Deletion	Chr2	19980674	19980676	2
Deletion	Chr7	23198334	23198424	90
Deletion	Chr6	24996336	24996385	49
Deletion	Chr2	25563446	25563447	1
Deletion	Chr5	25628419	25628536	117
Deletion	Chr8	25883556	25883558	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	16015101	16058520	OsKitaake09g114600
Inversion	Chr9	16015102	16058514	OsKitaake09g114600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes