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Mutant Information

Mutant Name	FN-294 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-294 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 233486 C-T Hetero INTERGENIC
SBS Chr1 6744759 G-A Hetero INTERGENIC
SBS Chr1 13269458 C-T Hetero INTERGENIC
SBS Chr1 15993242 G-A Hetero INTERGENIC
SBS Chr1 24525679 A-G Homo INTERGENIC
SBS Chr2 28142387 A-G Hetero INTERGENIC
SBS Chr3 347598 A-T Hetero UTR_3_PRIME
SBS Chr3 13161793 C-T Hetero INTRON
SBS Chr3 19470911 A-T Hetero INTERGENIC
SBS Chr4 17437774 A-T Homo INTERGENIC
SBS Chr4 19327081 A-T Homo INTERGENIC
SBS Chr5 9020466 C-T Homo INTERGENIC
SBS Chr5 12277833 C-T Hetero INTERGENIC
SBS Chr5 12307934 T-G Hetero INTERGENIC
SBS Chr6 16751170 A-G Hetero INTERGENIC
SBS Chr6 22969447 T-A Homo INTERGENIC
SBS Chr7 28172333 C-T Homo INTERGENIC
SBS Chr8 5137483 T-G Homo INTERGENIC
SBS Chr8 8273452 C-T Homo INTERGENIC
SBS Chr8 11467349 C-T Homo INTERGENIC
SBS Chr9 14050024 G-T Homo INTERGENIC
SBS Chr9 22531844 T-G Hetero INTRON
SBS Chr10 16173231 C-G Hetero INTERGENIC
SBS Chr10 22920100 G-A Hetero INTERGENIC
SBS Chr10 22920101 T-A Hetero INTERGENIC
SBS Chr11 25306257 T-C Hetero INTERGENIC
SBS Chr12 11134910 A-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 86160 86161 1
Deletion Chr1 3084001 3222000 137999 28
Deletion Chr1 3228001 3330000 101999 18
Deletion Chr3 3474922 3474923 1
Deletion Chr9 7681598 7681708 110
Deletion Chr1 8140337 8140497 160
Deletion Chr9 8908918 8908919 1
Deletion Chr12 10490945 10490946 1
Deletion Chr12 11652227 11652538 311
Deletion Chr11 15827001 15848000 20999 OsKitaake11g127100
Deletion Chr6 22859149 22859153 4
Deletion Chr6 25050255 25050473 218 OsKitaake06g222100
Deletion Chr3 29454001 29550000 95999 11
Deletion Chr3 29562001 29581000 18999 2
Deletion Chr5 30223346 30223347 1
Deletion Chr4 31407190 31407193 3
Deletion Chr1 38316938 38316939 1 OsKitaake01g408400

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32299490 32299493 2
Insertion Chr6 7793675 7793678 2
Insertion Chr7 17030083 17030086 2
Insertion Chr8 236934 236938 3
Insertion Chr3 8671974 8671978 3
Insertion Chr7 22848895 22848898 2

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 3005711 3084003 2
Inversion Chr1 3005722 3327553 2
Inversion Chr9 3134705 3290279
Inversion Chr12 5411482 6185252
Inversion Chr12 5411517 6185258
Inversion Chr2 15273556 15331811
Inversion Chr2 15273565 15331824
Inversion Chr5 18849873 18983752 OsKitaake05g147200
Inversion Chr5 18849886 18983759 OsKitaake05g147200
Inversion Chr3 23916513 23987802

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	233486	C-T	Hetero	INTERGENIC
SBS	Chr1	6744759	G-A	Hetero	INTERGENIC
SBS	Chr1	13269458	C-T	Hetero	INTERGENIC
SBS	Chr1	15993242	G-A	Hetero	INTERGENIC
SBS	Chr1	24525679	A-G	Homo	INTERGENIC
SBS	Chr2	28142387	A-G	Hetero	INTERGENIC
SBS	Chr3	347598	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	13161793	C-T	Hetero	INTRON
SBS	Chr3	19470911	A-T	Hetero	INTERGENIC
SBS	Chr4	17437774	A-T	Homo	INTERGENIC
SBS	Chr4	19327081	A-T	Homo	INTERGENIC
SBS	Chr5	9020466	C-T	Homo	INTERGENIC
SBS	Chr5	12277833	C-T	Hetero	INTERGENIC
SBS	Chr5	12307934	T-G	Hetero	INTERGENIC
SBS	Chr6	16751170	A-G	Hetero	INTERGENIC
SBS	Chr6	22969447	T-A	Homo	INTERGENIC
SBS	Chr7	28172333	C-T	Homo	INTERGENIC
SBS	Chr8	5137483	T-G	Homo	INTERGENIC
SBS	Chr8	8273452	C-T	Homo	INTERGENIC
SBS	Chr8	11467349	C-T	Homo	INTERGENIC
SBS	Chr9	14050024	G-T	Homo	INTERGENIC
SBS	Chr9	22531844	T-G	Hetero	INTRON
SBS	Chr10	16173231	C-G	Hetero	INTERGENIC
SBS	Chr10	22920100	G-A	Hetero	INTERGENIC
SBS	Chr10	22920101	T-A	Hetero	INTERGENIC
SBS	Chr11	25306257	T-C	Hetero	INTERGENIC
SBS	Chr12	11134910	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	86160	86161	1
Deletion	Chr1	3084001	3222000	137999	28
Deletion	Chr1	3228001	3330000	101999	18
Deletion	Chr3	3474922	3474923	1
Deletion	Chr9	7681598	7681708	110
Deletion	Chr1	8140337	8140497	160
Deletion	Chr9	8908918	8908919	1
Deletion	Chr12	10490945	10490946	1
Deletion	Chr12	11652227	11652538	311
Deletion	Chr11	15827001	15848000	20999	OsKitaake11g127100
Deletion	Chr6	22859149	22859153	4
Deletion	Chr6	25050255	25050473	218	OsKitaake06g222100
Deletion	Chr3	29454001	29550000	95999	11
Deletion	Chr3	29562001	29581000	18999	2
Deletion	Chr5	30223346	30223347	1
Deletion	Chr4	31407190	31407193	3
Deletion	Chr1	38316938	38316939	1	OsKitaake01g408400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3005711	3084003	2
Inversion	Chr1	3005722	3327553	2
Inversion	Chr9	3134705	3290279
Inversion	Chr12	5411482	6185252
Inversion	Chr12	5411517	6185258
Inversion	Chr2	15273556	15331811
Inversion	Chr2	15273565	15331824
Inversion	Chr5	18849873	18983752	OsKitaake05g147200
Inversion	Chr5	18849886	18983759	OsKitaake05g147200
Inversion	Chr3	23916513	23987802

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes