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| Mutant Information |
|---|
| Mutant Name | FN-295 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-295 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16122735 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 29369413 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 32668612 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 41728547 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 18222202 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 27777564 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31761809 | T-C | Homo | INTRON | |
| SBS | Chr4 | 1538502 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11479140 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17430939 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18508368 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 19300405 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31965178 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31965179 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24313845 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 12935736 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 27777271 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 5456224 | A-G | Homo | INTRON | |
| SBS | Chr7 | 24488869 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 548763 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 11314598 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1541554 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 20147428 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5813553 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g040100 |
| SBS | Chr10 | 7274456 | T-G | Hetero | INTRON | |
| SBS | Chr10 | 8282466 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 23673264 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 23673265 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27964512 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g229500 |
| SBS | Chr11 | 28459566 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 18469681 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21916065 | A-G | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 63619 | 63620 | 1 | |
| Deletion | Chr6 | 88291 | 88645 | 354 | |
| Deletion | Chr8 | 1766242 | 1766244 | 2 | |
| Deletion | Chr9 | 3318720 | 3318722 | 2 | |
| Deletion | Chr11 | 6579001 | 6637000 | 57999 | 6 |
| Deletion | Chr7 | 8165312 | 8165403 | 91 | OsKitaake07g089300 |
| Deletion | Chr6 | 8354780 | 8354781 | 1 | |
| Deletion | Chr11 | 12641742 | 12641744 | 2 | |
| Deletion | Chr5 | 18304308 | 18304309 | 1 | |
| Deletion | Chr10 | 18539725 | 18539727 | 2 | 2 |
| Deletion | Chr8 | 20549870 | 20549872 | 2 | |
| Deletion | Chr8 | 24204408 | 24204710 | 302 | |
| Deletion | Chr6 | 27159774 | 27159776 | 2 | |
| Deletion | Chr3 | 27860440 | 27860442 | 2 | |
| Deletion | Chr2 | 32017758 | 32017768 | 10 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 2837653 | 2837656 | 2 | |
| Insertion | Chr5 | 30226359 | 30226361 | 1 | |
| Insertion | Chr12 | 11211139 | 11211141 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 19512711 | 19722891 | OsKitaake09g159200 |
| Inversion | Chr9 | 19512715 | 19722902 | OsKitaake09g159200 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 6343410 | Chr2 | 12746684 | 2 |
| Translocation | Chr3 | 6343412 | Chr2 | 12746308 | 2 |