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| Mutant Information |
|---|
| Mutant Name | FN-296 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-296 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11602799 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 22749999 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 12993786 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31341435 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 5357643 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 36761173 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 1431616 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 5058673 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14112699 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14112700 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23627332 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 20232442 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 29186644 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 29246780 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 222680 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 20150379 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g157500 |
| SBS | Chr11 | 20150387 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 4039251 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15219246 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 20484020 | A-C | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 3118135 | 3118136 | 1 | OsKitaake01g040400 |
| Deletion | Chr4 | 4318884 | 4318885 | 1 | |
| Deletion | Chr7 | 4742180 | 4742305 | 125 | |
| Deletion | Chr6 | 7549896 | 7549947 | 51 | |
| Deletion | Chr9 | 7641682 | 7641683 | 1 | |
| Deletion | Chr2 | 10155284 | 10155285 | 1 | OsKitaake02g121901 |
| Deletion | Chr9 | 14366625 | 14366715 | 90 | |
| Deletion | Chr3 | 18897752 | 18897754 | 2 | OsKitaake03g227200 |
| Deletion | Chr11 | 20017310 | 20017313 | 3 | OsKitaake11g157271 |
| Deletion | Chr11 | 20150001 | 20213000 | 62999 | 3 |
| Deletion | Chr6 | 21271616 | 21271617 | 1 | OsKitaake06g188500 |
| Deletion | Chr4 | 23389650 | 23389651 | 1 | OsKitaake04g144300 |
| Deletion | Chr1 | 23893001 | 24011000 | 117999 | 12 |
| Deletion | Chr1 | 24013001 | 24241000 | 227999 | 29 |
| Deletion | Chr1 | 42608052 | 42608294 | 242 |
Insertions: 7
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 20083533 | 20151068 | OsKitaake11g157500 |
| Inversion | Chr11 | 20083570 | 20213207 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 502442 | Chr4 | 13087913 |