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| Mutant Information |
|---|
| Mutant Name | FN-298 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-298 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 179286 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 5669717 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 9350343 | G-T | Hetero | INTRON | |
| SBS | Chr1 | 9350344 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 13800707 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 32273888 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 17448507 | C-A | Homo | INTRON | |
| SBS | Chr2 | 19103145 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 22294877 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 23074156 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27551330 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g277000 |
| SBS | Chr3 | 9551757 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 11359331 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20923830 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 24108194 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25052814 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 28915423 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 3154017 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 15127297 | A-T | Homo | INTRON | |
| SBS | Chr4 | 18194655 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 24112097 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 26311722 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 31530981 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 33446907 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g275000 |
| SBS | Chr5 | 1293785 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24689108 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1474693 | G-C | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 27585481 | T-A | Hetero | INTRON | |
| SBS | Chr8 | 1776903 | T-G | Homo | INTRON | |
| SBS | Chr8 | 18771291 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 12303521 | C-A | Hetero | START_GAINED | |
| SBS | Chr10 | 17063806 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 6052181 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10852157 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 11414607 | G-T | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 231647 | 231652 | 5 | |
| Deletion | Chr6 | 285952 | 285957 | 5 | |
| Deletion | Chr8 | 7108577 | 7108578 | 1 | |
| Deletion | Chr7 | 8259425 | 8259469 | 44 | |
| Deletion | Chr5 | 9461001 | 9598000 | 136999 | 12 |
| Deletion | Chr6 | 10636524 | 10636624 | 100 | OsKitaake06g119501 |
| Deletion | Chr4 | 13171382 | 13171383 | 1 | |
| Deletion | Chr1 | 17094287 | 17094288 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 39812061 | 39812065 | 3 | |
| Insertion | Chr4 | 2917658 | 2917660 | 1 | |
| Insertion | Chr6 | 89620 | 89623 | 2 | |
| Insertion | Chr12 | 11713778 | 11713780 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 8860603 | 8891241 | OsKitaake08g081500 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 5012614 | Chr4 | 3828359 | |
| Translocation | Chr9 | 20623468 | Chr2 | 25289040 |