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Mutant Information

Mutant Name	FN-299 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-299 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6604364 G-C Hetero UTR_3_PRIME
SBS Chr1 14356683 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g163800
SBS Chr1 16675957 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 22846841 C-A Hetero INTERGENIC
SBS Chr1 23403959 G-A Hetero INTERGENIC
SBS Chr1 30097672 T-A Hetero INTERGENIC
SBS Chr1 30097673 T-A Hetero INTERGENIC
SBS Chr2 29195590 G-T Homo INTERGENIC
SBS Chr2 29624667 A-T Homo INTRON
SBS Chr3 16029302 G-T Homo INTERGENIC
SBS Chr3 16029303 C-T Homo INTERGENIC
SBS Chr3 17770867 C-T Hetero INTERGENIC
SBS Chr3 30503034 T-G Hetero INTRON
SBS Chr3 34718052 C-T Hetero INTERGENIC
SBS Chr4 20910758 G-T Hetero INTRON
SBS Chr4 24078659 A-T Hetero INTERGENIC
SBS Chr5 6965941 G-A Hetero INTERGENIC
SBS Chr5 6965942 T-A Hetero INTERGENIC
SBS Chr6 5832105 T-A Homo INTERGENIC
SBS Chr6 22010233 T-G Homo INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr7 12551854 C-T Hetero INTERGENIC
SBS Chr9 9437853 G-A Hetero INTERGENIC
SBS Chr9 10575347 G-A Hetero INTERGENIC
SBS Chr10 13326188 A-T Hetero INTERGENIC
SBS Chr11 10263557 T-A Hetero INTERGENIC
SBS Chr11 27832462 T-G Homo INTERGENIC
SBS Chr11 28749495 T-A Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 5135594 5135596 2
Deletion Chr3 11493518 11493529 11
Deletion Chr3 11564987 11564988 1
Deletion Chr4 24598146 24598148 2
Deletion Chr4 25468108 25468109 1
Deletion Chr2 25793373 25793378 5
Deletion Chr5 27767776 27767783 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 30236466 30236474 7
Insertion Chr6 446 448 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 20204674 20345750 OsKitaake10g153800
Inversion Chr10 20204682 20345771 OsKitaake10g153800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6604364	G-C	Hetero	UTR_3_PRIME
SBS	Chr1	14356683	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g163800
SBS	Chr1	16675957	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	22846841	C-A	Hetero	INTERGENIC
SBS	Chr1	23403959	G-A	Hetero	INTERGENIC
SBS	Chr1	30097672	T-A	Hetero	INTERGENIC
SBS	Chr1	30097673	T-A	Hetero	INTERGENIC
SBS	Chr2	29195590	G-T	Homo	INTERGENIC
SBS	Chr2	29624667	A-T	Homo	INTRON
SBS	Chr3	16029302	G-T	Homo	INTERGENIC
SBS	Chr3	16029303	C-T	Homo	INTERGENIC
SBS	Chr3	17770867	C-T	Hetero	INTERGENIC
SBS	Chr3	30503034	T-G	Hetero	INTRON
SBS	Chr3	34718052	C-T	Hetero	INTERGENIC
SBS	Chr4	20910758	G-T	Hetero	INTRON
SBS	Chr4	24078659	A-T	Hetero	INTERGENIC
SBS	Chr5	6965941	G-A	Hetero	INTERGENIC
SBS	Chr5	6965942	T-A	Hetero	INTERGENIC
SBS	Chr6	5832105	T-A	Homo	INTERGENIC
SBS	Chr6	22010233	T-G	Homo	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr7	12551854	C-T	Hetero	INTERGENIC
SBS	Chr9	9437853	G-A	Hetero	INTERGENIC
SBS	Chr9	10575347	G-A	Hetero	INTERGENIC
SBS	Chr10	13326188	A-T	Hetero	INTERGENIC
SBS	Chr11	10263557	T-A	Hetero	INTERGENIC
SBS	Chr11	27832462	T-G	Homo	INTERGENIC
SBS	Chr11	28749495	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	5135594	5135596	2
Deletion	Chr3	11493518	11493529	11
Deletion	Chr3	11564987	11564988	1
Deletion	Chr4	24598146	24598148	2
Deletion	Chr4	25468108	25468109	1
Deletion	Chr2	25793373	25793378	5
Deletion	Chr5	27767776	27767783	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	20204674	20345750	OsKitaake10g153800
Inversion	Chr10	20204682	20345771	OsKitaake10g153800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes