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Mutant Information

Mutant Name	FN-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-3 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6467825 A-T Hetero INTERGENIC
SBS Chr1 26958442 C-A Hetero INTRON
SBS Chr1 36643156 G-T Hetero INTRON
SBS Chr2 885729 G-T Hetero SYNONYMOUS_CODING
SBS Chr2 22508723 A-T Hetero INTRON
SBS Chr3 13073658 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g175300
SBS Chr3 28591960 C-T Homo INTRON
SBS Chr4 23185367 G-A Hetero INTERGENIC
SBS Chr5 25898773 G-T Homo INTERGENIC
SBS Chr6 16674544 G-C Hetero INTERGENIC
SBS Chr7 6156310 A-T Hetero INTRON
SBS Chr7 6661218 C-T Hetero INTERGENIC
SBS Chr7 15260239 G-A Hetero INTERGENIC
SBS Chr7 17345965 T-C Hetero INTERGENIC
SBS Chr8 1796473 G-A Homo INTERGENIC
SBS Chr9 7391429 A-G Hetero INTRON
SBS Chr10 12941568 G-A Homo INTERGENIC
SBS Chr11 6191677 T-C Hetero INTERGENIC
SBS Chr11 25739853 C-T Homo SYNONYMOUS_CODING
SBS Chr12 13579898 C-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 10009001 10175000 165999 9
Deletion Chr8 11336056 11336064 8
Deletion Chr7 12954071 12954072 1
Deletion Chr5 16611703 16611705 2
Deletion Chr5 16628428 16628434 6
Deletion Chr2 21014964 21014966 2
Deletion Chr7 26946734 26946739 5
Deletion Chr5 29525558 29525560 2 OsKitaake05g280600
Deletion Chr4 32313032 32313041 9
Deletion Chr1 40707194 40707242 48 OsKitaake01g442700

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 37284081 37284084 2
Insertion Chr10 23068139 23068143 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 9609719 Chr8 14255138
Translocation Chr12 19738876 Chr4 7201837

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6467825	A-T	Hetero	INTERGENIC
SBS	Chr1	26958442	C-A	Hetero	INTRON
SBS	Chr1	36643156	G-T	Hetero	INTRON
SBS	Chr2	885729	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	22508723	A-T	Hetero	INTRON
SBS	Chr3	13073658	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g175300
SBS	Chr3	28591960	C-T	Homo	INTRON
SBS	Chr4	23185367	G-A	Hetero	INTERGENIC
SBS	Chr5	25898773	G-T	Homo	INTERGENIC
SBS	Chr6	16674544	G-C	Hetero	INTERGENIC
SBS	Chr7	6156310	A-T	Hetero	INTRON
SBS	Chr7	6661218	C-T	Hetero	INTERGENIC
SBS	Chr7	15260239	G-A	Hetero	INTERGENIC
SBS	Chr7	17345965	T-C	Hetero	INTERGENIC
SBS	Chr8	1796473	G-A	Homo	INTERGENIC
SBS	Chr9	7391429	A-G	Hetero	INTRON
SBS	Chr10	12941568	G-A	Homo	INTERGENIC
SBS	Chr11	6191677	T-C	Hetero	INTERGENIC
SBS	Chr11	25739853	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	13579898	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	10009001	10175000	165999	9
Deletion	Chr8	11336056	11336064	8
Deletion	Chr7	12954071	12954072	1
Deletion	Chr5	16611703	16611705	2
Deletion	Chr5	16628428	16628434	6
Deletion	Chr2	21014964	21014966	2
Deletion	Chr7	26946734	26946739	5
Deletion	Chr5	29525558	29525560	2	OsKitaake05g280600
Deletion	Chr4	32313032	32313041	9
Deletion	Chr1	40707194	40707242	48	OsKitaake01g442700

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	9609719	Chr8	14255138
Translocation	Chr12	19738876	Chr4	7201837

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes