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| Mutant Information |
|---|
| Mutant Name | FN-30 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-30 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19664103 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 25342288 | T-C | Homo | INTRON | |
| SBS | Chr1 | 34910253 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 34910254 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 34919230 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 39272283 | A-C | Hetero | INTRON | |
| SBS | Chr2 | 15306092 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 29214980 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 4921276 | T-C | Homo | INTRON | |
| SBS | Chr3 | 29012529 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 36763090 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 36763091 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1389562 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 23570138 | C-T | Homo | INTRON | |
| SBS | Chr4 | 25296488 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 32729443 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 1150307 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g014600 |
| SBS | Chr5 | 4627278 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 24371272 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 29417082 | C-T | Homo | INTRON | |
| SBS | Chr7 | 8907674 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 19838156 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 22790627 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 24255191 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 15750855 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 15750857 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 5142594 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 15735498 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 21900575 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 25256172 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 29515440 | G-T | Homo | UTR_5_PRIME | |
| SBS | Chr12 | 18236149 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25919118 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g214200 |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 953402 | 953405 | 3 | |
| Deletion | Chr1 | 6821193 | 6821194 | 1 | OsKitaake01g086100 |
| Deletion | Chr9 | 8592001 | 8786000 | 193999 | 7 |
| Deletion | Chr4 | 11272856 | 11272857 | 1 | |
| Deletion | Chr7 | 12340679 | 12340680 | 1 | |
| Deletion | Chr8 | 13924848 | 13924849 | 1 | |
| Deletion | Chr4 | 19908722 | 19908724 | 2 | |
| Deletion | Chr1 | 23646393 | 23646512 | 119 | |
| Deletion | Chr6 | 24386187 | 24386189 | 2 | |
| Deletion | Chr3 | 29132300 | 29132302 | 2 | OsKitaake03g302800 |
| Deletion | Chr6 | 29248668 | 29248672 | 4 | |
| Deletion | Chr5 | 30009022 | 30009373 | 351 | |
| Deletion | Chr3 | 35348001 | 35463000 | 114999 | 8 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 4471064 | 4471067 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 8577994 | 8786441 | OsKitaake09g050600 |
| Inversion | Chr1 | 20596263 | 20660677 | |
| Inversion | Chr7 | 28314136 | 28967840 | OsKitaake07g267800 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 21091057 | Chr6 | 19796606 | 2 |
| Translocation | Chr12 | 21091059 | Chr6 | 19794305 | OsKitaake12g165400 |