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| Mutant Information |
|---|
| Mutant Name | FN-300 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-300 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9914253 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 9675991 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 17095039 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 18576000 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 29042725 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g292100 |
| SBS | Chr2 | 37161960 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 9975645 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g136400 |
| SBS | Chr3 | 12682746 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22134787 | G-T | Homo | INTRON | |
| SBS | Chr4 | 32149994 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 1395048 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 19048313 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 16412575 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 7643928 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 28631842 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 6205097 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18372496 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 5531865 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23996591 | G-C | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 60692 | 60698 | 6 | |
| Deletion | Chr10 | 5103842 | 5103844 | 2 | |
| Deletion | Chr12 | 8108541 | 8108548 | 7 | |
| Deletion | Chr5 | 13672001 | 13709000 | 36999 | 2 |
| Deletion | Chr5 | 16320779 | 16320780 | 1 | |
| Deletion | Chr9 | 17162001 | 17177000 | 14999 | OsKitaake09g128300 |
| Deletion | Chr2 | 19462207 | 19462311 | 104 | |
| Deletion | Chr6 | 20622542 | 20622544 | 2 | |
| Deletion | Chr12 | 20997206 | 20997208 | 2 | |
| Deletion | Chr3 | 25752001 | 25854000 | 101999 | 16 |
| Deletion | Chr3 | 25941349 | 25941350 | 1 | |
| Deletion | Chr1 | 26952942 | 26952947 | 5 | OsKitaake01g261900 |
| Deletion | Chr4 | 33347524 | 33347537 | 13 | |
| Deletion | Chr1 | 34594057 | 34594062 | 5 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 29513677 | 29513681 | 3 | |
| Insertion | Chr2 | 13865666 | 13865669 | 2 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 10698363 | 10721547 | |
| Inversion | Chr8 | 10698372 | 10721554 | |
| Inversion | Chr8 | 16596729 | 17027544 | |
| Inversion | Chr7 | 25584828 | 25691177 | OsKitaake07g234100 |
| Inversion | Chr7 | 25691194 | 25725224 | 2 |
| Inversion | Chr3 | 25932982 | 26389657 | OsKitaake03g273300 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 10523786 | Chr7 | 26092717 | |
| Translocation | Chr12 | 10524047 | Chr7 | 26769225 | OsKitaake07g249500 |
| Translocation | Chr7 | 26092874 | Chr3 | 25932995 | OsKitaake03g273300 |
| Translocation | Chr7 | 26093201 | Chr3 | 26390247 |