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Mutant Information

Mutant Name	FN-301 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-301 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16193659 G-A Hetero INTERGENIC
SBS Chr1 18874431 G-C Hetero INTERGENIC
SBS Chr1 34762967 A-G Hetero INTERGENIC
SBS Chr1 37246335 A-T Hetero INTERGENIC
SBS Chr2 1728832 A-T Homo INTERGENIC
SBS Chr2 1728839 T-A Homo INTERGENIC
SBS Chr2 3703042 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g053500
SBS Chr2 16882215 C-A Homo INTERGENIC
SBS Chr2 16882216 C-A Homo INTERGENIC
SBS Chr2 25051186 C-T Hetero INTERGENIC
SBS Chr2 27057924 G-A Hetero INTERGENIC
SBS Chr3 10516792 C-G Hetero INTRON
SBS Chr3 19044341 A-C Hetero UTR_3_PRIME
SBS Chr4 4081017 C-T Homo INTERGENIC
SBS Chr4 17102271 C-T Homo INTERGENIC
SBS Chr4 19164735 G-A Homo INTERGENIC
SBS Chr4 25539107 G-A Homo INTRON
SBS Chr4 26780244 G-A Hetero SPLICE_SITE_REGION
SBS Chr4 29484697 G-A Hetero INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr6 1844429 A-C Hetero UTR_3_PRIME
SBS Chr6 29674206 A-G Homo SYNONYMOUS_CODING
SBS Chr7 1589578 C-T Homo INTERGENIC
SBS Chr7 14631672 C-T Homo INTERGENIC
SBS Chr7 21246138 G-T Hetero INTRON
SBS Chr8 8738541 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g080600
SBS Chr8 28634036 T-C Homo INTERGENIC
SBS Chr9 5312226 T-A Hetero INTERGENIC
SBS Chr9 10369324 C-T Homo INTERGENIC
SBS Chr10 18261994 G-A Hetero INTERGENIC
SBS Chr11 4144567 C-T Hetero UTR_5_PRIME
SBS Chr11 6526143 G-C Hetero INTERGENIC
SBS Chr11 19437146 T-C Hetero INTERGENIC
SBS Chr11 19438197 G-A Hetero INTRON
SBS Chr11 27214740 G-C Hetero INTERGENIC
SBS Chr12 11206520 C-G Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1826348 1826401 53
Deletion Chr3 4089589 4089590 1
Deletion Chr5 6320458 6320459 1
Deletion Chr5 8764006 8764007 1
Deletion Chr1 9327437 9327439 2 OsKitaake01g119800
Deletion Chr6 14273007 14273217 210
Deletion Chr10 14638751 14638871 120
Deletion Chr5 16002768 16002874 106
Deletion Chr2 17552545 17552557 12
Deletion Chr4 18758178 18758301 123
Deletion Chr2 20873001 20927000 53999 4
Deletion Chr3 22461585 22461756 171
Deletion Chr4 24121550 24121557 7 OsKitaake04g154500
Deletion Chr12 24503043 24503111 68
Deletion Chr12 26057109 26057110 1
Deletion Chr3 30482631 30482632 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 6817833 6817835 1
Insertion Chr10 11885982 11885984 1
Insertion Chr10 19018105 19018108 2
Insertion Chr9 8005391 8005393 1
Insertion Chr12 11693872 11693874 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 892276 1688907
Inversion Chr1 892303 1688924
Inversion Chr2 20766210 20872998 OsKitaake02g201300
Inversion Chr2 20766221 20926774 OsKitaake02g201300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16193659	G-A	Hetero	INTERGENIC
SBS	Chr1	18874431	G-C	Hetero	INTERGENIC
SBS	Chr1	34762967	A-G	Hetero	INTERGENIC
SBS	Chr1	37246335	A-T	Hetero	INTERGENIC
SBS	Chr2	1728832	A-T	Homo	INTERGENIC
SBS	Chr2	1728839	T-A	Homo	INTERGENIC
SBS	Chr2	3703042	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g053500
SBS	Chr2	16882215	C-A	Homo	INTERGENIC
SBS	Chr2	16882216	C-A	Homo	INTERGENIC
SBS	Chr2	25051186	C-T	Hetero	INTERGENIC
SBS	Chr2	27057924	G-A	Hetero	INTERGENIC
SBS	Chr3	10516792	C-G	Hetero	INTRON
SBS	Chr3	19044341	A-C	Hetero	UTR_3_PRIME
SBS	Chr4	4081017	C-T	Homo	INTERGENIC
SBS	Chr4	17102271	C-T	Homo	INTERGENIC
SBS	Chr4	19164735	G-A	Homo	INTERGENIC
SBS	Chr4	25539107	G-A	Homo	INTRON
SBS	Chr4	26780244	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr4	29484697	G-A	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	1844429	A-C	Hetero	UTR_3_PRIME
SBS	Chr6	29674206	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	1589578	C-T	Homo	INTERGENIC
SBS	Chr7	14631672	C-T	Homo	INTERGENIC
SBS	Chr7	21246138	G-T	Hetero	INTRON
SBS	Chr8	8738541	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g080600
SBS	Chr8	28634036	T-C	Homo	INTERGENIC
SBS	Chr9	5312226	T-A	Hetero	INTERGENIC
SBS	Chr9	10369324	C-T	Homo	INTERGENIC
SBS	Chr10	18261994	G-A	Hetero	INTERGENIC
SBS	Chr11	4144567	C-T	Hetero	UTR_5_PRIME
SBS	Chr11	6526143	G-C	Hetero	INTERGENIC
SBS	Chr11	19437146	T-C	Hetero	INTERGENIC
SBS	Chr11	19438197	G-A	Hetero	INTRON
SBS	Chr11	27214740	G-C	Hetero	INTERGENIC
SBS	Chr12	11206520	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1826348	1826401	53
Deletion	Chr3	4089589	4089590	1
Deletion	Chr5	6320458	6320459	1
Deletion	Chr5	8764006	8764007	1
Deletion	Chr1	9327437	9327439	2	OsKitaake01g119800
Deletion	Chr6	14273007	14273217	210
Deletion	Chr10	14638751	14638871	120
Deletion	Chr5	16002768	16002874	106
Deletion	Chr2	17552545	17552557	12
Deletion	Chr4	18758178	18758301	123
Deletion	Chr2	20873001	20927000	53999	4
Deletion	Chr3	22461585	22461756	171
Deletion	Chr4	24121550	24121557	7	OsKitaake04g154500
Deletion	Chr12	24503043	24503111	68
Deletion	Chr12	26057109	26057110	1
Deletion	Chr3	30482631	30482632	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	892276	1688907
Inversion	Chr1	892303	1688924
Inversion	Chr2	20766210	20872998	OsKitaake02g201300
Inversion	Chr2	20766221	20926774	OsKitaake02g201300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes