Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-303 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-303 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21820053 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 30468160 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 34753191 | A-C | Homo | INTRON | |
| SBS | Chr2 | 1912614 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 14091202 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 2853052 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 7887317 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 12020921 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31245788 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 22401419 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 12189167 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 24501945 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14754051 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 22544927 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 29020814 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12061075 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 12535802 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13272999 | C-T | Homo | INTRON | |
| SBS | Chr10 | 6756473 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 17466546 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 3877798 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 6752799 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 18993504 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 736644 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5662081 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 18767401 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23076163 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25604019 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 26158967 | G-A | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 88990 | 88991 | 1 | |
| Deletion | Chr6 | 1463699 | 1463705 | 6 | |
| Deletion | Chr5 | 5504747 | 5504875 | 128 | |
| Deletion | Chr7 | 6185073 | 6185079 | 6 | |
| Deletion | Chr7 | 6395297 | 6395298 | 1 | OsKitaake07g074500 |
| Deletion | Chr2 | 8504988 | 8504989 | 1 | OsKitaake02g108050 |
| Deletion | Chr10 | 8913363 | 8913365 | 2 | |
| Deletion | Chr1 | 8964695 | 8964697 | 2 | |
| Deletion | Chr6 | 12461509 | 12461514 | 5 | |
| Deletion | Chr3 | 16205424 | 16205435 | 11 | |
| Deletion | Chr3 | 16214000 | 16214085 | 85 | |
| Deletion | Chr1 | 18176001 | 18261000 | 84999 | 4 |
| Deletion | Chr8 | 23380058 | 23380060 | 2 | |
| Deletion | Chr11 | 28896924 | 28896991 | 67 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 12265059 | 12265062 | 2 | |
| Insertion | Chr6 | 10143285 | 10143288 | 2 | |
| Insertion | Chr2 | 13855581 | 13855584 | 2 | |
| Insertion | Chr4 | 9891532 | 9891534 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 9893026 | 10161096 | OsKitaake03g135300 |
| Inversion | Chr4 | 20645379 | 20898272 | OsKitaake04g111600 |
| Inversion | Chr4 | 20645384 | 20898283 | OsKitaake04g111600 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 9348617 | Chr1 | 39470865 | |
| Translocation | Chr11 | 9348621 | Chr1 | 39464385 | |
| Translocation | Chr9 | 17781297 | Chr3 | 9893019 | 2 |