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Mutant Information

Mutant Name	FN-305 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-305 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7353496 A-G Hetero INTERGENIC
SBS Chr1 21761911 G-A Homo INTERGENIC
SBS Chr1 23296016 C-T Homo INTERGENIC
SBS Chr2 24905766 G-A Hetero INTERGENIC
SBS Chr3 7453838 G-A Hetero UTR_3_PRIME
SBS Chr3 9796012 G-T Hetero INTERGENIC
SBS Chr3 17437612 C-T Hetero INTERGENIC
SBS Chr3 26551455 A-G Hetero INTERGENIC
SBS Chr3 27137490 A-G Hetero INTERGENIC
SBS Chr3 32215886 G-T Hetero INTERGENIC
SBS Chr3 37179303 C-T Homo INTRON
SBS Chr4 16312491 A-C Homo INTERGENIC
SBS Chr4 18870030 C-T Hetero INTERGENIC
SBS Chr5 475515 C-G Hetero INTERGENIC
SBS Chr5 4309804 A-G Hetero UTR_5_PRIME
SBS Chr5 7984462 G-A Hetero INTERGENIC
SBS Chr6 3704082 T-A Homo INTERGENIC
SBS Chr6 8978878 G-A Hetero INTRON
SBS Chr6 10142627 C-T Hetero INTERGENIC
SBS Chr6 11468586 C-T Hetero INTERGENIC
SBS Chr6 17386116 A-T Hetero INTERGENIC
SBS Chr6 21983803 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g193500
SBS Chr6 30992231 G-A Homo INTERGENIC
SBS Chr7 15806572 C-A Hetero INTERGENIC
SBS Chr8 4155189 G-C Hetero INTERGENIC
SBS Chr8 11116028 C-T Hetero INTERGENIC
SBS Chr8 16252091 G-A Homo INTERGENIC
SBS Chr11 1860153 T-A Hetero INTERGENIC
SBS Chr11 11241613 A-T Hetero INTERGENIC
SBS Chr11 11241614 G-T Hetero INTERGENIC
SBS Chr11 13004277 G-A Hetero INTERGENIC
SBS Chr11 13092654 C-T Hetero INTERGENIC
SBS Chr11 18508682 C-T Hetero INTERGENIC
SBS Chr11 21047131 C-G Homo INTERGENIC
SBS Chr11 22801145 G-C Homo INTERGENIC
SBS Chr12 3092240 G-T Homo INTERGENIC
SBS Chr12 4657945 A-T Homo INTERGENIC
SBS Chr12 4657953 A-G Homo INTERGENIC
SBS Chr12 7422252 G-A Homo INTERGENIC
SBS Chr12 10465708 G-A Homo INTERGENIC
SBS Chr12 13433874 T-A Homo INTRON
SBS Chr12 14134223 G-A Homo INTERGENIC
SBS Chr12 14784372 G-A Homo INTERGENIC
SBS Chr12 23328006 G-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1160033 1160034 1 OsKitaake09g006900
Deletion Chr5 3154273 3154274 1 OsKitaake05g037700
Deletion Chr6 5698794 5698796 2
Deletion Chr4 9480408 9480580 172
Deletion Chr10 9880646 9880648 2 OsKitaake10g057700
Deletion Chr2 12685466 12685470 4
Deletion Chr8 13490546 13490548 2
Deletion Chr7 14486148 14486150 2
Deletion Chr2 14747241 14747243 2
Deletion Chr7 17270838 17270930 92
Deletion Chr1 17283622 17284286 664
Deletion Chr3 18449001 18755000 305999 22
Deletion Chr5 25714031 25714032 1
Deletion Chr11 26444726 26444854 128
Deletion Chr1 26658592 26658597 5
Deletion Chr4 35844862 35844863 1
Deletion Chr3 37063260 37063261 1
Deletion Chr3 37428821 37428911 90

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 229818 229821 2
Insertion Chr7 28219582 28219584 1
Insertion Chr11 23912038 23912041 2
Insertion Chr4 15771735 15771737 1
Insertion Chr4 18345247 18345250 2
Insertion Chr5 30228616 30228624 7
Insertion Chr8 7323137 7323139 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 15583389 16052312
Inversion Chr5 15583406 16052315
Inversion Chr7 17416496 18009711
Inversion Chr7 17416504 18009709

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 15581639 Chr4 18770596 OsKitaake04g094100
Translocation Chr5 15582007 Chr4 18770602 OsKitaake04g094100
Translocation Chr10 21954401 Chr3 19472379 OsKitaake10g177300
Translocation Chr10 21954411 Chr3 19470162 OsKitaake10g177300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7353496	A-G	Hetero	INTERGENIC
SBS	Chr1	21761911	G-A	Homo	INTERGENIC
SBS	Chr1	23296016	C-T	Homo	INTERGENIC
SBS	Chr2	24905766	G-A	Hetero	INTERGENIC
SBS	Chr3	7453838	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	9796012	G-T	Hetero	INTERGENIC
SBS	Chr3	17437612	C-T	Hetero	INTERGENIC
SBS	Chr3	26551455	A-G	Hetero	INTERGENIC
SBS	Chr3	27137490	A-G	Hetero	INTERGENIC
SBS	Chr3	32215886	G-T	Hetero	INTERGENIC
SBS	Chr3	37179303	C-T	Homo	INTRON
SBS	Chr4	16312491	A-C	Homo	INTERGENIC
SBS	Chr4	18870030	C-T	Hetero	INTERGENIC
SBS	Chr5	475515	C-G	Hetero	INTERGENIC
SBS	Chr5	4309804	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	7984462	G-A	Hetero	INTERGENIC
SBS	Chr6	3704082	T-A	Homo	INTERGENIC
SBS	Chr6	8978878	G-A	Hetero	INTRON
SBS	Chr6	10142627	C-T	Hetero	INTERGENIC
SBS	Chr6	11468586	C-T	Hetero	INTERGENIC
SBS	Chr6	17386116	A-T	Hetero	INTERGENIC
SBS	Chr6	21983803	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g193500
SBS	Chr6	30992231	G-A	Homo	INTERGENIC
SBS	Chr7	15806572	C-A	Hetero	INTERGENIC
SBS	Chr8	4155189	G-C	Hetero	INTERGENIC
SBS	Chr8	11116028	C-T	Hetero	INTERGENIC
SBS	Chr8	16252091	G-A	Homo	INTERGENIC
SBS	Chr11	1860153	T-A	Hetero	INTERGENIC
SBS	Chr11	11241613	A-T	Hetero	INTERGENIC
SBS	Chr11	11241614	G-T	Hetero	INTERGENIC
SBS	Chr11	13004277	G-A	Hetero	INTERGENIC
SBS	Chr11	13092654	C-T	Hetero	INTERGENIC
SBS	Chr11	18508682	C-T	Hetero	INTERGENIC
SBS	Chr11	21047131	C-G	Homo	INTERGENIC
SBS	Chr11	22801145	G-C	Homo	INTERGENIC
SBS	Chr12	3092240	G-T	Homo	INTERGENIC
SBS	Chr12	4657945	A-T	Homo	INTERGENIC
SBS	Chr12	4657953	A-G	Homo	INTERGENIC
SBS	Chr12	7422252	G-A	Homo	INTERGENIC
SBS	Chr12	10465708	G-A	Homo	INTERGENIC
SBS	Chr12	13433874	T-A	Homo	INTRON
SBS	Chr12	14134223	G-A	Homo	INTERGENIC
SBS	Chr12	14784372	G-A	Homo	INTERGENIC
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1160033	1160034	1	OsKitaake09g006900
Deletion	Chr5	3154273	3154274	1	OsKitaake05g037700
Deletion	Chr6	5698794	5698796	2
Deletion	Chr4	9480408	9480580	172
Deletion	Chr10	9880646	9880648	2	OsKitaake10g057700
Deletion	Chr2	12685466	12685470	4
Deletion	Chr8	13490546	13490548	2
Deletion	Chr7	14486148	14486150	2
Deletion	Chr2	14747241	14747243	2
Deletion	Chr7	17270838	17270930	92
Deletion	Chr1	17283622	17284286	664
Deletion	Chr3	18449001	18755000	305999	22
Deletion	Chr5	25714031	25714032	1
Deletion	Chr11	26444726	26444854	128
Deletion	Chr1	26658592	26658597	5
Deletion	Chr4	35844862	35844863	1
Deletion	Chr3	37063260	37063261	1
Deletion	Chr3	37428821	37428911	90

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	15583389	16052312
Inversion	Chr5	15583406	16052315
Inversion	Chr7	17416496	18009711
Inversion	Chr7	17416504	18009709

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes