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Mutant Information

Mutant Name	FN-306 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-306 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11362396 T-G Hetero INTRON
SBS Chr1 11362397 C-T Hetero INTRON
SBS Chr1 22828148 T-C Hetero INTERGENIC
SBS Chr1 28003200 G-A Hetero INTRON
SBS Chr1 35086383 A-G Homo INTERGENIC
SBS Chr1 37842055 G-A Hetero INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 1518745 A-C Hetero INTERGENIC
SBS Chr2 2734712 G-A Hetero UTR_5_PRIME
SBS Chr2 18320856 A-G Hetero INTERGENIC
SBS Chr2 21441494 C-T Hetero INTERGENIC
SBS Chr2 32862136 C-T Homo INTRON
SBS Chr2 32862137 T-A Homo INTRON
SBS Chr3 1735963 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 9935575 G-T Hetero INTRON
SBS Chr3 19319515 G-A Homo INTERGENIC
SBS Chr3 19735153 G-T Hetero INTERGENIC
SBS Chr3 29178250 G-C Hetero INTERGENIC
SBS Chr3 31545950 C-G Homo INTERGENIC
SBS Chr3 36523051 A-C Homo UTR_3_PRIME
SBS Chr4 6954633 A-G Hetero INTERGENIC
SBS Chr4 18741270 C-A Hetero INTERGENIC
SBS Chr4 25375568 G-C Homo INTERGENIC
SBS Chr4 25889316 C-A Homo INTERGENIC
SBS Chr4 34828474 C-T Hetero INTERGENIC
SBS Chr5 5492331 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g059501
SBS Chr5 11209035 G-A Hetero INTERGENIC
SBS Chr5 25728145 G-A Hetero INTERGENIC
SBS Chr5 26639048 C-T Hetero INTERGENIC
SBS Chr6 6470351 T-A Hetero INTERGENIC
SBS Chr7 3313857 A-T Homo INTERGENIC
SBS Chr7 6436377 C-T Hetero INTERGENIC
SBS Chr7 10886436 G-A Homo INTERGENIC
SBS Chr8 4332354 G-A Hetero INTERGENIC
SBS Chr8 8524931 C-A Hetero INTERGENIC
SBS Chr8 18249886 A-T Hetero INTRON
SBS Chr9 2781009 C-T Hetero INTERGENIC
SBS Chr9 2919669 G-C Hetero INTERGENIC
SBS Chr10 4156543 T-G Homo INTERGENIC
SBS Chr10 22286570 C-T Homo UTR_3_PRIME
SBS Chr12 8195197 C-A Hetero INTERGENIC
SBS Chr12 12276988 G-T Hetero INTERGENIC
SBS Chr12 12331985 T-C Hetero INTERGENIC
SBS Chr12 18928067 G-A Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 15154 15155 1
Deletion Chr12 4549771 4549772 1 OsKitaake12g060500
Deletion Chr11 5661214 5661217 3
Deletion Chr9 8779925 8780016 91
Deletion Chr1 9403648 9403649 1
Deletion Chr5 10130633 10130634 1
Deletion Chr7 14230575 14230576 1
Deletion Chr5 15447051 15447059 8
Deletion Chr2 19738293 19738295 2 OsKitaake02g193000
Deletion Chr4 20675308 20675309 1
Deletion Chr1 25999552 25999554 2 OsKitaake01g252800
Deletion Chr1 35056920 35056924 4 OsKitaake01g369800

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 8518352 8518355 2
Insertion Chr3 26310606 26310609 2
Insertion Chr4 18215924 18215926 1
Insertion Chr5 30225097 30225105 7

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 14172145 14179745
Inversion Chr2 20851058 21152955
Inversion Chr2 20851081 21152955

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11362396	T-G	Hetero	INTRON
SBS	Chr1	11362397	C-T	Hetero	INTRON
SBS	Chr1	22828148	T-C	Hetero	INTERGENIC
SBS	Chr1	28003200	G-A	Hetero	INTRON
SBS	Chr1	35086383	A-G	Homo	INTERGENIC
SBS	Chr1	37842055	G-A	Hetero	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	1518745	A-C	Hetero	INTERGENIC
SBS	Chr2	2734712	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	18320856	A-G	Hetero	INTERGENIC
SBS	Chr2	21441494	C-T	Hetero	INTERGENIC
SBS	Chr2	32862136	C-T	Homo	INTRON
SBS	Chr2	32862137	T-A	Homo	INTRON
SBS	Chr3	1735963	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	9935575	G-T	Hetero	INTRON
SBS	Chr3	19319515	G-A	Homo	INTERGENIC
SBS	Chr3	19735153	G-T	Hetero	INTERGENIC
SBS	Chr3	29178250	G-C	Hetero	INTERGENIC
SBS	Chr3	31545950	C-G	Homo	INTERGENIC
SBS	Chr3	36523051	A-C	Homo	UTR_3_PRIME
SBS	Chr4	6954633	A-G	Hetero	INTERGENIC
SBS	Chr4	18741270	C-A	Hetero	INTERGENIC
SBS	Chr4	25375568	G-C	Homo	INTERGENIC
SBS	Chr4	25889316	C-A	Homo	INTERGENIC
SBS	Chr4	34828474	C-T	Hetero	INTERGENIC
SBS	Chr5	5492331	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g059501
SBS	Chr5	11209035	G-A	Hetero	INTERGENIC
SBS	Chr5	25728145	G-A	Hetero	INTERGENIC
SBS	Chr5	26639048	C-T	Hetero	INTERGENIC
SBS	Chr6	6470351	T-A	Hetero	INTERGENIC
SBS	Chr7	3313857	A-T	Homo	INTERGENIC
SBS	Chr7	6436377	C-T	Hetero	INTERGENIC
SBS	Chr7	10886436	G-A	Homo	INTERGENIC
SBS	Chr8	4332354	G-A	Hetero	INTERGENIC
SBS	Chr8	8524931	C-A	Hetero	INTERGENIC
SBS	Chr8	18249886	A-T	Hetero	INTRON
SBS	Chr9	2781009	C-T	Hetero	INTERGENIC
SBS	Chr9	2919669	G-C	Hetero	INTERGENIC
SBS	Chr10	4156543	T-G	Homo	INTERGENIC
SBS	Chr10	22286570	C-T	Homo	UTR_3_PRIME
SBS	Chr12	8195197	C-A	Hetero	INTERGENIC
SBS	Chr12	12276988	G-T	Hetero	INTERGENIC
SBS	Chr12	12331985	T-C	Hetero	INTERGENIC
SBS	Chr12	18928067	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	15154	15155	1
Deletion	Chr12	4549771	4549772	1	OsKitaake12g060500
Deletion	Chr11	5661214	5661217	3
Deletion	Chr9	8779925	8780016	91
Deletion	Chr1	9403648	9403649	1
Deletion	Chr5	10130633	10130634	1
Deletion	Chr7	14230575	14230576	1
Deletion	Chr5	15447051	15447059	8
Deletion	Chr2	19738293	19738295	2	OsKitaake02g193000
Deletion	Chr4	20675308	20675309	1
Deletion	Chr1	25999552	25999554	2	OsKitaake01g252800
Deletion	Chr1	35056920	35056924	4	OsKitaake01g369800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	14172145	14179745
Inversion	Chr2	20851058	21152955
Inversion	Chr2	20851081	21152955

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes