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Mutant Information

Mutant Name	FN-307 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-307 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 38849223 G-A Homo INTRON
SBS Chr2 11793571 A-G Homo INTERGENIC
SBS Chr2 26309698 T-C Homo INTRON
SBS Chr3 22061762 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g241258
SBS Chr4 8219303 A-T Homo NON_SYNONYMOUS_CODING OsKitaake04g042900
SBS Chr4 20000376 C-A Hetero INTRON
SBS Chr4 20223933 G-A Hetero INTERGENIC
SBS Chr4 23166891 T-C Hetero INTERGENIC
SBS Chr4 35485594 C-T Hetero INTERGENIC
SBS Chr5 3194672 G-T Hetero INTERGENIC
SBS Chr5 3363025 C-G Hetero INTERGENIC
SBS Chr5 27888967 A-G Hetero INTERGENIC
SBS Chr5 27888972 A-T Hetero INTERGENIC
SBS Chr6 23317303 C-T Hetero INTERGENIC
SBS Chr7 18924406 T-A Hetero INTERGENIC
SBS Chr7 21278571 T-A Hetero UTR_5_PRIME
SBS Chr8 766586 G-T Hetero INTERGENIC
SBS Chr8 9945597 G-A Hetero INTERGENIC
SBS Chr8 10916885 A-T Hetero INTERGENIC
SBS Chr8 14331050 G-A Hetero INTERGENIC
SBS Chr8 15910771 A-G Hetero INTERGENIC
SBS Chr8 16932339 A-G Hetero INTRON
SBS Chr9 19282918 C-T Hetero INTERGENIC
SBS Chr9 21595267 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g189500
SBS Chr10 3715336 T-A Hetero INTERGENIC
SBS Chr10 3715338 C-A Hetero INTERGENIC
SBS Chr10 18663439 C-T Homo UTR_3_PRIME
SBS Chr11 1825333 C-T Homo INTRON
SBS Chr11 16448375 A-T Homo INTERGENIC
SBS Chr11 16448376 A-T Homo INTERGENIC
SBS Chr11 28055280 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g230300
SBS Chr12 15113871 A-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 62771 63478 707
Deletion Chr7 2850971 2851292 321
Deletion Chr4 3216842 3216848 6 OsKitaake04g016801
Deletion Chr12 3923880 3924006 126
Deletion Chr8 8125092 8125218 126 OsKitaake08g074300
Deletion Chr10 8654782 8654829 47 OsKitaake10g053166
Deletion Chr6 10242391 10242393 2
Deletion Chr7 11996537 11997045 508
Deletion Chr4 14085207 14085215 8
Deletion Chr6 14298349 14298534 185
Deletion Chr2 21396413 21396414 1
Deletion Chr2 24516615 24516625 10
Deletion Chr2 25532909 25532915 6
Deletion Chr3 25849001 25902000 52999 OsKitaake03g272900
Deletion Chr3 29132300 29132302 2 OsKitaake03g302800
Deletion Chr5 30246720 30246721 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 21162569 21162605 35
Insertion Chr6 29025531 29025533 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 9506388 Chr2 10532886 OsKitaake06g112300
Translocation Chr6 9506397 Chr2 10532706 OsKitaake06g112300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38849223	G-A	Homo	INTRON
SBS	Chr2	11793571	A-G	Homo	INTERGENIC
SBS	Chr2	26309698	T-C	Homo	INTRON
SBS	Chr3	22061762	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g241258
SBS	Chr4	8219303	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g042900
SBS	Chr4	20000376	C-A	Hetero	INTRON
SBS	Chr4	20223933	G-A	Hetero	INTERGENIC
SBS	Chr4	23166891	T-C	Hetero	INTERGENIC
SBS	Chr4	35485594	C-T	Hetero	INTERGENIC
SBS	Chr5	3194672	G-T	Hetero	INTERGENIC
SBS	Chr5	3363025	C-G	Hetero	INTERGENIC
SBS	Chr5	27888967	A-G	Hetero	INTERGENIC
SBS	Chr5	27888972	A-T	Hetero	INTERGENIC
SBS	Chr6	23317303	C-T	Hetero	INTERGENIC
SBS	Chr7	18924406	T-A	Hetero	INTERGENIC
SBS	Chr7	21278571	T-A	Hetero	UTR_5_PRIME
SBS	Chr8	766586	G-T	Hetero	INTERGENIC
SBS	Chr8	9945597	G-A	Hetero	INTERGENIC
SBS	Chr8	10916885	A-T	Hetero	INTERGENIC
SBS	Chr8	14331050	G-A	Hetero	INTERGENIC
SBS	Chr8	15910771	A-G	Hetero	INTERGENIC
SBS	Chr8	16932339	A-G	Hetero	INTRON
SBS	Chr9	19282918	C-T	Hetero	INTERGENIC
SBS	Chr9	21595267	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g189500
SBS	Chr10	3715336	T-A	Hetero	INTERGENIC
SBS	Chr10	3715338	C-A	Hetero	INTERGENIC
SBS	Chr10	18663439	C-T	Homo	UTR_3_PRIME
SBS	Chr11	1825333	C-T	Homo	INTRON
SBS	Chr11	16448375	A-T	Homo	INTERGENIC
SBS	Chr11	16448376	A-T	Homo	INTERGENIC
SBS	Chr11	28055280	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g230300
SBS	Chr12	15113871	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	62771	63478	707
Deletion	Chr7	2850971	2851292	321
Deletion	Chr4	3216842	3216848	6	OsKitaake04g016801
Deletion	Chr12	3923880	3924006	126
Deletion	Chr8	8125092	8125218	126	OsKitaake08g074300
Deletion	Chr10	8654782	8654829	47	OsKitaake10g053166
Deletion	Chr6	10242391	10242393	2
Deletion	Chr7	11996537	11997045	508
Deletion	Chr4	14085207	14085215	8
Deletion	Chr6	14298349	14298534	185
Deletion	Chr2	21396413	21396414	1
Deletion	Chr2	24516615	24516625	10
Deletion	Chr2	25532909	25532915	6
Deletion	Chr3	25849001	25902000	52999	OsKitaake03g272900
Deletion	Chr3	29132300	29132302	2	OsKitaake03g302800
Deletion	Chr5	30246720	30246721	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	9506388	Chr2	10532886	OsKitaake06g112300
Translocation	Chr6	9506397	Chr2	10532706	OsKitaake06g112300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes