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| Mutant Information |
|---|
| Mutant Name | FN-308 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-308 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6578166 | G-A | Homo | INTRON | |
| SBS | Chr1 | 25694136 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 27371436 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 29724180 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9826986 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 26883157 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 2391088 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 2406458 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15037921 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 22207850 | G-C | Homo | INTERGENIC | |
| SBS | Chr6 | 12177490 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20729698 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 20729703 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 1734186 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 1734187 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g024300 |
| SBS | Chr7 | 24251011 | C-A | Hetero | STOP_GAINED | OsKitaake07g215900 |
| SBS | Chr8 | 27284151 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 5563106 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 7017194 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 7918072 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 19500782 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 6599787 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 20650838 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 22963392 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 27877598 | C-A | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 2013878 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g031700 |
| SBS | Chr12 | 11394140 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21362582 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 23164194 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g184900 |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 4979658 | 4979659 | 1 | |
| Deletion | Chr7 | 6406813 | 6406814 | 1 | |
| Deletion | Chr12 | 8045153 | 8045154 | 1 | |
| Deletion | Chr8 | 8661661 | 8661662 | 1 | OsKitaake08g079800 |
| Deletion | Chr11 | 10248867 | 10249080 | 213 | |
| Deletion | Chr7 | 13724001 | 13729000 | 4999 | |
| Deletion | Chr1 | 15065444 | 15065446 | 2 | |
| Deletion | Chr6 | 15758778 | 15758779 | 1 | |
| Deletion | Chr12 | 21358274 | 21358490 | 216 | |
| Deletion | Chr5 | 25516870 | 25516871 | 1 | OsKitaake05g223300 |
| Deletion | Chr3 | 27317752 | 27317753 | 1 | OsKitaake03g281300 |
| Deletion | Chr8 | 28139001 | 28261000 | 121999 | 22 |
| Deletion | Chr3 | 29711027 | 29711029 | 2 | |
| Deletion | Chr3 | 29732375 | 29732380 | 5 | |
| Deletion | Chr1 | 32791359 | 32791484 | 125 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 12217932 | 12217935 | 2 | OsKitaake09g079700  |
| Insertion | Chr1 | 34967116 | 34967121 | 4 | |
| Insertion | Chr3 | 22492942 | 22492944 | 1 | |
| Insertion | Chr5 | 30215229 | 30215231 | 1 |