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| Mutant Information |
|---|
| Mutant Name | FN-309 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-309 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26513226 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1443422 | G-A | Homo | INTRON | |
| SBS | Chr2 | 12281120 | C-T | Homo | INTRON | |
| SBS | Chr2 | 17279851 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27542137 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 16006223 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 31749357 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 33998057 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 34084777 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 34156238 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 35865368 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 11932136 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 13553464 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 22792632 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 26544203 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 5059752 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20598837 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 14675018 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 23115747 | A-C | Hetero | INTRON | |
| SBS | Chr6 | 23975457 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8389309 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13811827 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 12057159 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19803155 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g145900 |
| SBS | Chr11 | 1800615 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 4525175 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21011555 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 4071475 | A-G | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 584016 | 584032 | 16 | |
| Deletion | Chr2 | 2769330 | 2769331 | 1 | |
| Deletion | Chr12 | 4589844 | 4589845 | 1 | |
| Deletion | Chr12 | 8900280 | 8900282 | 2 | |
| Deletion | Chr5 | 9636391 | 9636400 | 9 | |
| Deletion | Chr4 | 13287559 | 13287560 | 1 | |
| Deletion | Chr4 | 21519859 | 21519869 | 10 | |
| Deletion | Chr8 | 25325001 | 25329000 | 3999 | OsKitaake08g198200 |
| Deletion | Chr3 | 25935725 | 25935871 | 146 | |
| Deletion | Chr11 | 27906001 | 28046000 | 139999 | 15 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 1593841 | 1593844 | 2 | |
| Insertion | Chr7 | 12045873 | 12045875 | 1 | |
| Insertion | Chr7 | 13058477 | 13058479 | 1 | OsKitaake07g115400  |
| Insertion | Chr8 | 1396065 | 1396067 | 1 | |
| Insertion | Chr8 | 13431372 | 13431374 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 4397122 | 4404654 | |
| Inversion | Chr12 | 4397123 | 4404671 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 3117977 | Chr1 | 37488953 | |
| Translocation | Chr8 | 25324584 | Chr3 | 1462597 |