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Mutant Information

Mutant Name	FN-31 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-31 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8862572 T-C Hetero INTRON
SBS Chr2 10498193 A-G Homo INTERGENIC
SBS Chr2 13454099 A-G Homo INTRON
SBS Chr2 23530318 T-C Homo INTERGENIC
SBS Chr3 15702223 C-T Hetero INTERGENIC
SBS Chr3 20298340 G-C Hetero INTERGENIC
SBS Chr3 21270732 C-T Hetero INTERGENIC
SBS Chr3 25330594 C-A Hetero INTRON
SBS Chr4 3806527 C-T Homo INTERGENIC
SBS Chr4 18338841 C-T Homo INTERGENIC
SBS Chr4 18338842 C-T Homo INTERGENIC
SBS Chr4 20880440 G-C Hetero INTERGENIC
SBS Chr4 24407331 G-C Hetero INTERGENIC
SBS Chr5 4120078 C-T Hetero INTERGENIC
SBS Chr5 11644318 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g095700
SBS Chr5 27428159 G-A Hetero INTRON
SBS Chr6 10510260 C-A Hetero INTERGENIC
SBS Chr7 25137492 C-T Homo INTERGENIC
SBS Chr7 27898242 A-T Hetero INTERGENIC
SBS Chr8 23392480 C-T Hetero INTRON
SBS Chr9 4089160 G-A Homo INTERGENIC
SBS Chr10 22170937 A-G Homo INTRON
SBS Chr11 1070016 C-G Hetero UTR_3_PRIME
SBS Chr11 20952870 G-C Hetero INTERGENIC
SBS Chr11 21185761 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g167800
SBS Chr11 28660694 T-G Hetero INTERGENIC
SBS Chr12 16122872 C-T Homo INTERGENIC
SBS Chr12 25924835 G-A Homo INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 5286321 5286689 368 OsKitaake10g037801
Deletion Chr4 8226682 8226683 1
Deletion Chr12 13504764 13504780 16
Deletion Chr2 14903758 14903759 1
Deletion Chr5 16990546 16990548 2 OsKitaake05g130101
Deletion Chr3 17049873 17049874 1
Deletion Chr4 20683195 20683206 11
Deletion Chr1 30467029 30467044 15
Deletion Chr3 30668428 30668431 3
Deletion Chr3 32213748 32213769 21
Deletion Chr3 34452313 34452316 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 5219404 5219407 2
Insertion Chr3 767853 767856 2
Insertion Chr3 9711996 9712000 3
Insertion Chr3 9871859 9871862 2
Insertion Chr10 12364796 12364798 1
Insertion Chr10 1149788 1149790 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 15833843 16313692 OsKitaake11g127100
Inversion Chr6 20993878 21151281 OsKitaake06g187100

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 29038667 Chr4 33806246

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8862572	T-C	Hetero	INTRON
SBS	Chr2	10498193	A-G	Homo	INTERGENIC
SBS	Chr2	13454099	A-G	Homo	INTRON
SBS	Chr2	23530318	T-C	Homo	INTERGENIC
SBS	Chr3	15702223	C-T	Hetero	INTERGENIC
SBS	Chr3	20298340	G-C	Hetero	INTERGENIC
SBS	Chr3	21270732	C-T	Hetero	INTERGENIC
SBS	Chr3	25330594	C-A	Hetero	INTRON
SBS	Chr4	3806527	C-T	Homo	INTERGENIC
SBS	Chr4	18338841	C-T	Homo	INTERGENIC
SBS	Chr4	18338842	C-T	Homo	INTERGENIC
SBS	Chr4	20880440	G-C	Hetero	INTERGENIC
SBS	Chr4	24407331	G-C	Hetero	INTERGENIC
SBS	Chr5	4120078	C-T	Hetero	INTERGENIC
SBS	Chr5	11644318	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g095700
SBS	Chr5	27428159	G-A	Hetero	INTRON
SBS	Chr6	10510260	C-A	Hetero	INTERGENIC
SBS	Chr7	25137492	C-T	Homo	INTERGENIC
SBS	Chr7	27898242	A-T	Hetero	INTERGENIC
SBS	Chr8	23392480	C-T	Hetero	INTRON
SBS	Chr9	4089160	G-A	Homo	INTERGENIC
SBS	Chr10	22170937	A-G	Homo	INTRON
SBS	Chr11	1070016	C-G	Hetero	UTR_3_PRIME
SBS	Chr11	20952870	G-C	Hetero	INTERGENIC
SBS	Chr11	21185761	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g167800
SBS	Chr11	28660694	T-G	Hetero	INTERGENIC
SBS	Chr12	16122872	C-T	Homo	INTERGENIC
SBS	Chr12	25924835	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	5286321	5286689	368	OsKitaake10g037801
Deletion	Chr4	8226682	8226683	1
Deletion	Chr12	13504764	13504780	16
Deletion	Chr2	14903758	14903759	1
Deletion	Chr5	16990546	16990548	2	OsKitaake05g130101
Deletion	Chr3	17049873	17049874	1
Deletion	Chr4	20683195	20683206	11
Deletion	Chr1	30467029	30467044	15
Deletion	Chr3	30668428	30668431	3
Deletion	Chr3	32213748	32213769	21
Deletion	Chr3	34452313	34452316	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	15833843	16313692	OsKitaake11g127100
Inversion	Chr6	20993878	21151281	OsKitaake06g187100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes