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| Mutant Information |
|---|
| Mutant Name | FN-310 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-310 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4592072 | A-G | Homo | INTRON | |
| SBS | Chr1 | 31597461 | A-G | Homo | INTRON | |
| SBS | Chr2 | 10372083 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 19981947 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 24492807 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 27275207 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 16841985 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30522397 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21736300 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 30004065 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 36092499 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 12365486 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 12365487 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15577684 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17794637 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18767624 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20560987 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 30697940 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 3116312 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23879361 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 8883900 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 9111888 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17206019 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16587280 | T-C | Homo | INTRON | |
| SBS | Chr9 | 16829448 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 9938642 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15379573 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 17682643 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 26464597 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 1587069 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g024201 |
| SBS | Chr12 | 15617651 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 15696710 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 19878516 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 25250653 | G-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 6684510 | 6684512 | 2 | OsKitaake03g094900 |
| Deletion | Chr12 | 13299858 | 13299859 | 1 | |
| Deletion | Chr2 | 13837961 | 13837963 | 2 | |
| Deletion | Chr2 | 16761863 | 16761864 | 1 | |
| Deletion | Chr2 | 17437471 | 17437476 | 5 | |
| Deletion | Chr10 | 20452763 | 20452764 | 1 | OsKitaake10g156500 |
| Deletion | Chr7 | 20574773 | 20574774 | 1 | |
| Deletion | Chr5 | 20988816 | 20988818 | 2 | |
| Deletion | Chr4 | 24801936 | 24801937 | 1 | |
| Deletion | Chr8 | 25751127 | 25751130 | 3 | |
| Deletion | Chr7 | 26594628 | 26594634 | 6 | |
| Deletion | Chr4 | 35429371 | 35429373 | 2 | |
| Deletion | Chr1 | 35432337 | 35432339 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 821856 | 821859 | 2 | |
| Insertion | Chr7 | 18890530 | 18890533 | 2 | |
| Insertion | Chr12 | 11689040 | 11689042 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 13131357 | 13149844 | |
| Inversion | Chr1 | 36205036 | 36470735 | OsKitaake01g387500 |
| Inversion | Chr1 | 36205047 | 36470742 | OsKitaake01g387500 |