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| Mutant Information |
|---|
| Mutant Name | FN-311 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-311 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 34557507 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 10385597 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 20648847 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 20751169 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27110222 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 27861416 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 17035970 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 32195503 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13320449 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 13320451 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 31143158 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 8996836 | C-G | Hetero | INTRON | |
| SBS | Chr5 | 9737532 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11435643 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 11689171 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 28977003 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 22082133 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 23631037 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16145160 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 8311378 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14464008 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9950860 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13145000 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11503379 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 13194062 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 22963828 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 27677401 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 14084492 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 16416498 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 26569642 | C-T | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 4325247 | 4325248 | 1 | OsKitaake01g057600 |
| Deletion | Chr8 | 4536471 | 4536473 | 2 | |
| Deletion | Chr8 | 9043235 | 9043319 | 84 | |
| Deletion | Chr2 | 10417263 | 10417265 | 2 | |
| Deletion | Chr11 | 10881349 | 10881351 | 2 | OsKitaake11g105800 |
| Deletion | Chr2 | 10987065 | 10987156 | 91 | |
| Deletion | Chr7 | 12991964 | 12992031 | 67 | |
| Deletion | Chr4 | 15864378 | 15864380 | 2 | OsKitaake04g077550 |
| Deletion | Chr3 | 16652864 | 16652955 | 91 | |
| Deletion | Chr12 | 19180446 | 19180450 | 4 | |
| Deletion | Chr11 | 20138634 | 20138731 | 97 | |
| Deletion | Chr9 | 21243820 | 21243822 | 2 | |
| Deletion | Chr8 | 24104001 | 24115000 | 10999 | OsKitaake08g186200 |
| Deletion | Chr11 | 24342192 | 24342230 | 38 | |
| Deletion | Chr2 | 26640001 | 26695000 | 54999 | 7 |
| Deletion | Chr4 | 33660321 | 33660323 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 43985611 | 43985614 | 2 | |
| Insertion | Chr5 | 3719989 | 3719992 | 2 | |
| Insertion | Chr6 | 98647 | 98649 | 1 | |
| Insertion | Chr7 | 13341750 | 13341753 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 24103721 | Chr4 | 27170856 | |
| Translocation | Chr8 | 24104454 | Chr4 | 27170855 |