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| Mutant Information |
|---|
| Mutant Name | FN-312 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-312 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2865999 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 21396581 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 1559848 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 8181435 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34386091 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13724154 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16359609 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28865858 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 30334717 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 30334718 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15347347 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 29887812 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 1136746 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 28665025 | A-C | Homo | INTERGENIC | |
| SBS | Chr9 | 11734395 | T-C | Homo | INTRON | |
| SBS | Chr10 | 5947082 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 6706207 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 13566313 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 18791945 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 4559898 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 4464282 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23791475 | C-T | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1999409 | 1999411 | 2 | OsKitaake03g028700 |
| Deletion | Chr8 | 5400918 | 5400919 | 1 | |
| Deletion | Chr11 | 5686532 | 5686533 | 1 | |
| Deletion | Chr10 | 8675813 | 8675979 | 166 | |
| Deletion | Chr10 | 8706655 | 8706656 | 1 | |
| Deletion | Chr8 | 10683908 | 10683912 | 4 | |
| Deletion | Chr1 | 13247390 | 13247394 | 4 | |
| Deletion | Chr11 | 17133349 | 17133350 | 1 | OsKitaake11g133750 |
| Deletion | Chr5 | 22262454 | 22262768 | 314 | OsKitaake05g182000 |
| Deletion | Chr12 | 26721056 | 26721058 | 2 | |
| Deletion | Chr11 | 26958780 | 26959206 | 426 | |
| Deletion | Chr5 | 30258420 | 30258421 | 1 | |
| Deletion | Chr4 | 34510613 | 34511074 | 461 | |
| Deletion | Chr3 | 35339037 | 35339038 | 1 | OsKitaake03g387600 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 11018528 | 11018531 | 2 | |
| Insertion | Chr7 | 24524126 | 24524129 | 2 | |
| Insertion | Chr9 | 11219290 | 11219292 | 1 | |
| Insertion | Chr4 | 21162949 | 21162985 | 35 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 28380133 | 29361114 | OsKitaake06g259400 |
| Inversion | Chr6 | 28380443 | 29361130 | OsKitaake06g259400 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 9098341 | Chr6 | 28380134 | OsKitaake06g259400 |