Search Kitaake

Mutant Information

Mutant Name	FN-314 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-314 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8086510 G-A Homo INTERGENIC
SBS Chr1 12695932 G-A Hetero INTRON
SBS Chr1 18433661 A-G Hetero INTERGENIC
SBS Chr1 22038254 C-T Homo INTERGENIC
SBS Chr1 44019100 C-G Homo INTRON
SBS Chr1 44019101 T-A Homo INTRON
SBS Chr2 1594618 A-T Hetero INTRON
SBS Chr2 17848252 C-A Hetero INTERGENIC
SBS Chr2 22347753 T-G Hetero INTERGENIC
SBS Chr3 1714772 G-T Hetero INTERGENIC
SBS Chr4 1832097 G-A Hetero INTERGENIC
SBS Chr4 14852071 T-A Hetero INTERGENIC
SBS Chr4 16946576 A-G Hetero INTERGENIC
SBS Chr4 29692841 G-A Homo INTERGENIC
SBS Chr4 29692842 G-C Homo INTERGENIC
SBS Chr4 34271813 C-T Hetero INTRON
SBS Chr5 10749695 C-A Hetero INTERGENIC
SBS Chr5 10871462 C-G Hetero UTR_5_PRIME
SBS Chr5 15398121 G-A Homo INTERGENIC
SBS Chr5 26992625 G-C Homo INTERGENIC
SBS Chr6 7962025 G-C Homo INTERGENIC
SBS Chr6 28012337 G-A Hetero INTERGENIC
SBS Chr7 940414 C-T Hetero INTERGENIC
SBS Chr7 18896984 C-G Homo INTERGENIC
SBS Chr8 20478632 A-T Homo INTERGENIC
SBS Chr10 5358713 G-A Hetero INTERGENIC
SBS Chr11 14867079 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g122700
SBS Chr11 16638366 G-T Hetero INTERGENIC
SBS Chr11 16638367 C-T Hetero INTERGENIC
SBS Chr12 10669052 T-A Hetero INTERGENIC
SBS Chr12 20060670 G-C Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1295449 1295450 1
Deletion Chr3 1592227 1592229 2 OsKitaake03g022400
Deletion Chr10 2262078 2262087 9
Deletion Chr9 3811769 3811770 1
Deletion Chr12 6739745 6739746 1
Deletion Chr12 8333004 8333013 9 OsKitaake12g086300
Deletion Chr5 9827155 9827165 10
Deletion Chr11 11301008 11301009 1 OsKitaake11g108000
Deletion Chr9 11459322 11459327 5 OsKitaake09g071300
Deletion Chr2 13724216 13724217 1
Deletion Chr4 14192512 14192518 6 OsKitaake04g068000
Deletion Chr3 16269292 16269294 2
Deletion Chr2 16780568 16780574 6
Deletion Chr9 17452725 17452729 4
Deletion Chr8 18008760 18008762 2
Deletion Chr5 19015264 19015265 1
Deletion Chr5 19761965 19761968 3
Deletion Chr11 23763624 23763651 27 OsKitaake11g189900
Deletion Chr3 27484333 27484334 1 OsKitaake03g283700
Deletion Chr11 28017765 28017768 3
Deletion Chr6 29310605 29310617 12
Deletion Chr6 29675171 29675172 1
Deletion Chr4 31098336 31098355 19
Deletion Chr1 43796641 43796643 2
Deletion Chr1 44041317 44041323 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21380293 21380296 2
Insertion Chr6 24846096 24846099 2
Insertion Chr6 26323341 26323343 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 12271425 12357425 OsKitaake04g059500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8086510	G-A	Homo	INTERGENIC
SBS	Chr1	12695932	G-A	Hetero	INTRON
SBS	Chr1	18433661	A-G	Hetero	INTERGENIC
SBS	Chr1	22038254	C-T	Homo	INTERGENIC
SBS	Chr1	44019100	C-G	Homo	INTRON
SBS	Chr1	44019101	T-A	Homo	INTRON
SBS	Chr2	1594618	A-T	Hetero	INTRON
SBS	Chr2	17848252	C-A	Hetero	INTERGENIC
SBS	Chr2	22347753	T-G	Hetero	INTERGENIC
SBS	Chr3	1714772	G-T	Hetero	INTERGENIC
SBS	Chr4	1832097	G-A	Hetero	INTERGENIC
SBS	Chr4	14852071	T-A	Hetero	INTERGENIC
SBS	Chr4	16946576	A-G	Hetero	INTERGENIC
SBS	Chr4	29692841	G-A	Homo	INTERGENIC
SBS	Chr4	29692842	G-C	Homo	INTERGENIC
SBS	Chr4	34271813	C-T	Hetero	INTRON
SBS	Chr5	10749695	C-A	Hetero	INTERGENIC
SBS	Chr5	10871462	C-G	Hetero	UTR_5_PRIME
SBS	Chr5	15398121	G-A	Homo	INTERGENIC
SBS	Chr5	26992625	G-C	Homo	INTERGENIC
SBS	Chr6	7962025	G-C	Homo	INTERGENIC
SBS	Chr6	28012337	G-A	Hetero	INTERGENIC
SBS	Chr7	940414	C-T	Hetero	INTERGENIC
SBS	Chr7	18896984	C-G	Homo	INTERGENIC
SBS	Chr8	20478632	A-T	Homo	INTERGENIC
SBS	Chr10	5358713	G-A	Hetero	INTERGENIC
SBS	Chr11	14867079	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g122700
SBS	Chr11	16638366	G-T	Hetero	INTERGENIC
SBS	Chr11	16638367	C-T	Hetero	INTERGENIC
SBS	Chr12	10669052	T-A	Hetero	INTERGENIC
SBS	Chr12	20060670	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1295449	1295450	1
Deletion	Chr3	1592227	1592229	2	OsKitaake03g022400
Deletion	Chr10	2262078	2262087	9
Deletion	Chr9	3811769	3811770	1
Deletion	Chr12	6739745	6739746	1
Deletion	Chr12	8333004	8333013	9	OsKitaake12g086300
Deletion	Chr5	9827155	9827165	10
Deletion	Chr11	11301008	11301009	1	OsKitaake11g108000
Deletion	Chr9	11459322	11459327	5	OsKitaake09g071300
Deletion	Chr2	13724216	13724217	1
Deletion	Chr4	14192512	14192518	6	OsKitaake04g068000
Deletion	Chr3	16269292	16269294	2
Deletion	Chr2	16780568	16780574	6
Deletion	Chr9	17452725	17452729	4
Deletion	Chr8	18008760	18008762	2
Deletion	Chr5	19015264	19015265	1
Deletion	Chr5	19761965	19761968	3
Deletion	Chr11	23763624	23763651	27	OsKitaake11g189900
Deletion	Chr3	27484333	27484334	1	OsKitaake03g283700
Deletion	Chr11	28017765	28017768	3
Deletion	Chr6	29310605	29310617	12
Deletion	Chr6	29675171	29675172	1
Deletion	Chr4	31098336	31098355	19
Deletion	Chr1	43796641	43796643	2
Deletion	Chr1	44041317	44041323	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	12271425	12357425	OsKitaake04g059500

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes