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| Mutant Information |
|---|
| Mutant Name | FN-315 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-315 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32808922 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 37811476 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g403700 |
| SBS | Chr2 | 33753747 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 13058035 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 24023638 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 20051419 | C-T | Homo | INTRON | |
| SBS | Chr4 | 26399138 | A-G | Homo | INTRON | |
| SBS | Chr5 | 5262250 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 8512381 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19836266 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 27296883 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 28057861 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g254600 |
| SBS | Chr6 | 28147570 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 5860135 | T-G | Hetero | INTRON | |
| SBS | Chr7 | 23404270 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr8 | 8270103 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5075288 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 21431063 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13971564 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 13971572 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 16057494 | G-T | Homo | STOP_GAINED | OsKitaake10g106600 |
| SBS | Chr10 | 16057495 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g106600 |
| SBS | Chr10 | 18431465 | C-G | Hetero | INTRON | |
| SBS | Chr10 | 23013661 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 29479207 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g242400 |
| SBS | Chr12 | 11582950 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 2540690 | 2540696 | 6 | |
| Deletion | Chr9 | 3631776 | 3631778 | 2 | OsKitaake09g018900 |
| Deletion | Chr8 | 5448960 | 5448962 | 2 | OsKitaake08g059300 |
| Deletion | Chr7 | 6489856 | 6489864 | 8 | |
| Deletion | Chr10 | 7770354 | 7770358 | 4 | |
| Deletion | Chr10 | 14142680 | 14142691 | 11 | |
| Deletion | Chr4 | 20597933 | 20597934 | 1 | |
| Deletion | Chr8 | 21431386 | 21431389 | 3 | |
| Deletion | Chr10 | 21453001 | 21524000 | 70999 | 10 |
| Deletion | Chr2 | 29369273 | 29369274 | 1 | OsKitaake02g295600 |
| Deletion | Chr11 | 29717774 | 29717777 | 3 | |
| Deletion | Chr2 | 29914151 | 29914152 | 1 | |
| Deletion | Chr4 | 30473955 | 30473961 | 6 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 18897752 | 18897755 | 2 | |
| Insertion | Chr9 | 21724701 | 21724703 | 1 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4423104 | 5396039 | |
| Inversion | Chr5 | 4423147 | 4670335 | OsKitaake05g053400 |
| Inversion | Chr2 | 14571590 | 14582831 | |
| Inversion | Chr2 | 14571605 | 14582846 | |
| Inversion | Chr11 | 20830260 | 20830451 |