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Mutant Information

Mutant Name	FN-316 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-316 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4710885 T-C Hetero INTERGENIC
SBS Chr1 6090674 A-G Hetero INTERGENIC
SBS Chr1 9141243 G-T Hetero UTR_3_PRIME
SBS Chr1 15490834 T-C Hetero INTERGENIC
SBS Chr2 21790922 T-A Hetero INTERGENIC
SBS Chr3 22391961 T-G Hetero INTERGENIC
SBS Chr3 23879798 C-G Hetero INTERGENIC
SBS Chr3 24283697 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g259800
SBS Chr3 26527977 C-T Hetero INTERGENIC
SBS Chr4 1466259 T-G Hetero INTERGENIC
SBS Chr4 5440959 C-G Homo INTERGENIC
SBS Chr4 22486077 C-G Homo INTRON
SBS Chr4 29770744 G-A Hetero INTERGENIC
SBS Chr4 32739410 C-T Hetero INTRON
SBS Chr4 34270685 G-T Hetero INTRON
SBS Chr5 5801656 A-T Homo INTERGENIC
SBS Chr5 18885277 G-A Homo INTERGENIC
SBS Chr6 9087820 C-A Hetero UTR_5_PRIME
SBS Chr6 22701069 T-C Hetero INTRON
SBS Chr6 22701073 G-A Hetero INTRON
SBS Chr7 10594268 C-T Hetero INTERGENIC
SBS Chr7 15285346 C-G Hetero INTERGENIC
SBS Chr7 15466381 G-A Hetero INTERGENIC
SBS Chr8 4108311 G-A Hetero INTERGENIC
SBS Chr8 4126746 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g046700
SBS Chr8 4394099 T-A Hetero INTERGENIC
SBS Chr9 18385076 T-A Hetero INTERGENIC
SBS Chr10 4459904 G-T Hetero INTERGENIC
SBS Chr10 5585258 T-C Homo INTERGENIC
SBS Chr11 9994559 G-A Homo INTERGENIC
SBS Chr11 26706699 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 934001 952000 17999 4
Deletion Chr1 4821074 4821075 1
Deletion Chr11 5453974 5453986 12
Deletion Chr8 6269242 6269423 181
Deletion Chr2 9758116 9758138 22
Deletion Chr4 10450844 10450854 10
Deletion Chr10 12639436 12639439 3
Deletion Chr8 13090803 13090809 6
Deletion Chr5 17727842 17727846 4
Deletion Chr4 24769459 24769462 3
Deletion Chr1 25051001 25115000 63999 3
Deletion Chr2 29409014 29409027 13

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr5 22354122 22354124 1
Insertion Chr7 1254156 1254159 2
Insertion Chr4 28102484 28102487 2
Insertion Chr11 14261831 14261834 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4431260 Chr9 210558

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4710885	T-C	Hetero	INTERGENIC
SBS	Chr1	6090674	A-G	Hetero	INTERGENIC
SBS	Chr1	9141243	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	15490834	T-C	Hetero	INTERGENIC
SBS	Chr2	21790922	T-A	Hetero	INTERGENIC
SBS	Chr3	22391961	T-G	Hetero	INTERGENIC
SBS	Chr3	23879798	C-G	Hetero	INTERGENIC
SBS	Chr3	24283697	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g259800
SBS	Chr3	26527977	C-T	Hetero	INTERGENIC
SBS	Chr4	1466259	T-G	Hetero	INTERGENIC
SBS	Chr4	5440959	C-G	Homo	INTERGENIC
SBS	Chr4	22486077	C-G	Homo	INTRON
SBS	Chr4	29770744	G-A	Hetero	INTERGENIC
SBS	Chr4	32739410	C-T	Hetero	INTRON
SBS	Chr4	34270685	G-T	Hetero	INTRON
SBS	Chr5	5801656	A-T	Homo	INTERGENIC
SBS	Chr5	18885277	G-A	Homo	INTERGENIC
SBS	Chr6	9087820	C-A	Hetero	UTR_5_PRIME
SBS	Chr6	22701069	T-C	Hetero	INTRON
SBS	Chr6	22701073	G-A	Hetero	INTRON
SBS	Chr7	10594268	C-T	Hetero	INTERGENIC
SBS	Chr7	15285346	C-G	Hetero	INTERGENIC
SBS	Chr7	15466381	G-A	Hetero	INTERGENIC
SBS	Chr8	4108311	G-A	Hetero	INTERGENIC
SBS	Chr8	4126746	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g046700
SBS	Chr8	4394099	T-A	Hetero	INTERGENIC
SBS	Chr9	18385076	T-A	Hetero	INTERGENIC
SBS	Chr10	4459904	G-T	Hetero	INTERGENIC
SBS	Chr10	5585258	T-C	Homo	INTERGENIC
SBS	Chr11	9994559	G-A	Homo	INTERGENIC
SBS	Chr11	26706699	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	934001	952000	17999	4
Deletion	Chr1	4821074	4821075	1
Deletion	Chr11	5453974	5453986	12
Deletion	Chr8	6269242	6269423	181
Deletion	Chr2	9758116	9758138	22
Deletion	Chr4	10450844	10450854	10
Deletion	Chr10	12639436	12639439	3
Deletion	Chr8	13090803	13090809	6
Deletion	Chr5	17727842	17727846	4
Deletion	Chr4	24769459	24769462	3
Deletion	Chr1	25051001	25115000	63999	3
Deletion	Chr2	29409014	29409027	13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4431260	Chr9	210558

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes