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| Mutant Information |
|---|
| Mutant Name | FN-32 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-32 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 34035887 | G-T | Hetero | INTRON | |
| SBS | Chr1 | 34035888 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 11281067 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 14272275 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16350164 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 25688654 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 31858641 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 37160113 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7740064 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 26727733 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 28760240 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g270000 |
| SBS | Chr6 | 7629588 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15474116 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 747657 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3214168 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18924593 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 19037345 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 9787967 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10781511 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 12067184 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 11174114 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 14150458 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 22876992 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 7026197 | T-C | Homo | INTRON | |
| SBS | Chr11 | 11279586 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 23732236 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 24186101 | G-A | Homo | INTRON | |
| SBS | Chr11 | 27954276 | A-T | Homo | UTR_5_PRIME | |
| SBS | Chr11 | 28231925 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 2453317 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 12262561 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18787168 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19654478 | G-C | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 4020313 | 4020326 | 13 | |
| Deletion | Chr5 | 4889493 | 4889496 | 3 | |
| Deletion | Chr2 | 6345073 | 6345074 | 1 | |
| Deletion | Chr11 | 7332618 | 7332643 | 25 | |
| Deletion | Chr4 | 7397763 | 7397764 | 1 | |
| Deletion | Chr11 | 7622162 | 7622163 | 1 | |
| Deletion | Chr11 | 11741001 | 11808000 | 66999 | 3 |
| Deletion | Chr11 | 16429697 | 16429822 | 125 | |
| Deletion | Chr1 | 19965814 | 19965816 | 2 | |
| Deletion | Chr2 | 20770459 | 20770466 | 7 | OsKitaake02g201300 |
| Deletion | Chr6 | 22334527 | 22334528 | 1 | |
| Deletion | Chr3 | 23523794 | 23523796 | 2 | |
| Deletion | Chr3 | 23605899 | 23605900 | 1 | |
| Deletion | Chr11 | 23732458 | 23732460 | 2 | |
| Deletion | Chr7 | 27208001 | 27345000 | 136999 | 3 |
| Deletion | Chr7 | 27347001 | 27447000 | 99999 | 7 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 30240668 | 30240670 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 7028121 | 7161192 | OsKitaake12g080100 |
| Inversion | Chr12 | 7028140 | 7161195 | OsKitaake12g080100 |
| Inversion | Chr2 | 15795471 | 16317763 | 2 |
| Inversion | Chr2 | 15795505 | 16317783 | 2 |
| Inversion | Chr2 | 26297702 | 26443280 | OsKitaake02g261600 |
| Inversion | Chr4 | 32510616 | 33265566 | 2 |