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| Mutant Information |
|---|
| Mutant Name | FN-325 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-325 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16253330 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16255818 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 35525277 | A-T | Homo | INTRON | |
| SBS | Chr2 | 10830584 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17653660 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 30521227 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13732527 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14254908 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 18112930 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31337644 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 7456085 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 24061266 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g212900 |
| SBS | Chr6 | 10108312 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 16506257 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 21817570 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24862222 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7037514 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 3672856 | A-C | Hetero | UTR_5_PRIME | |
| SBS | Chr9 | 13520141 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 14525070 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 14563281 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 14563282 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 9773435 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7832933 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 24917270 | G-C | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1650594 | 1650595 | 1 | |
| Deletion | Chr5 | 3767001 | 3782000 | 14999 | OsKitaake05g045200 |
| Deletion | Chr3 | 4909086 | 4909088 | 2 | |
| Deletion | Chr12 | 8900280 | 8900282 | 2 | |
| Deletion | Chr10 | 9983862 | 9983863 | 1 | |
| Deletion | Chr9 | 15554831 | 15554928 | 97 | |
| Deletion | Chr8 | 18481404 | 18481710 | 306 | |
| Deletion | Chr5 | 23352728 | 23353144 | 416 | |
| Deletion | Chr2 | 33105666 | 33105673 | 7 | OsKitaake02g339800 |
| Deletion | Chr1 | 44013110 | 44013256 | 146 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 21162949 | 21162985 | 35 | |
| Insertion | Chr6 | 1373469 | 1373476 | 6 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 2940880 | 3449952 | |
| Inversion | Chr12 | 2940882 | 3449952 |