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| Mutant Information |
|---|
| Mutant Name | FN-328 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-328 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19402640 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 26718572 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8539275 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 31397361 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 16520424 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 18779313 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 29139661 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 5799813 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 16777941 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 675527 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 8997912 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15137471 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 3786729 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g048700 |
| SBS | Chr7 | 4479453 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 16934804 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 26809955 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 3104486 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 4515637 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 12477941 | T-C | Homo | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 729351 | 729352 | 1 | |
| Deletion | Chr12 | 1826348 | 1826401 | 53 | |
| Deletion | Chr2 | 2079425 | 2079430 | 5 | OsKitaake02g031500 |
| Deletion | Chr9 | 3867520 | 3867525 | 5 | |
| Deletion | Chr10 | 5135594 | 5135596 | 2 | |
| Deletion | Chr2 | 5695057 | 5695059 | 2 | |
| Deletion | Chr11 | 10248867 | 10249080 | 213 | |
| Deletion | Chr8 | 12551024 | 12551029 | 5 | |
| Deletion | Chr8 | 12618944 | 12618945 | 1 | |
| Deletion | Chr12 | 13809153 | 13809154 | 1 | |
| Deletion | Chr6 | 16128840 | 16128844 | 4 | |
| Deletion | Chr6 | 19414770 | 19414775 | 5 | |
| Deletion | Chr8 | 19796253 | 19796254 | 1 | |
| Deletion | Chr7 | 20444076 | 20444078 | 2 | |
| Deletion | Chr1 | 21137584 | 21137598 | 14 | |
| Deletion | Chr12 | 22494686 | 22494687 | 1 | OsKitaake12g176200 |
| Deletion | Chr11 | 24769842 | 24769844 | 2 | |
| Deletion | Chr4 | 26024272 | 26024274 | 2 | |
| Deletion | Chr1 | 33793781 | 33793790 | 9 | |
| Deletion | Chr3 | 35412227 | 35412228 | 1 | OsKitaake03g388600 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 16744382 | 16744384 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 11984794 | 12346557 | |
| Inversion | Chr5 | 11984842 | 12346564 | |
| Inversion | Chr8 | 27308231 | 28284206 | |
| Inversion | Chr8 | 27308241 | 28284223 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 3826577 | Chr3 | 31593934 | |
| Translocation | Chr11 | 3826972 | Chr3 | 31593953 | OsKitaake11g053300 |
| Translocation | Chr4 | 31544237 | Chr3 | 20805518 | OsKitaake04g248300 |